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Hi. I've been using your software to perform a pedigree study of whole genome sequencing data.I drew histograms of AB and GQ using Slivar DDC, and next I had a problem selecting thresholds based on these graphs.Could you please tell me how to define the Y-axis count of the graph, and how to select the threshold value suitable for our data?
Thank you very much!
The text was updated successfully, but these errors were encountered:
Hi, it's almost always fine to use AB >= 0.2 for hets and this plot shows that as well. Note the orange peak at below 0.2
The y-axis is the number of variants at each allele balance on the x-axis, so it's a histogram.
Hi. I've been using your software to perform a pedigree study of whole genome sequencing data.I drew histograms of AB and GQ using Slivar DDC, and next I had a problem selecting thresholds based on these graphs.Could you please tell me how to define the Y-axis count of the graph, and how to select the threshold value suitable for our data?
Thank you very much!
The text was updated successfully, but these errors were encountered: