MoRP

Python implementation of Median of Ratio's normalisation method.

Props to:

Anders, S. and Huber, W. (2010) ‘Differential expression analysis for sequence count data’, GENOME BIOLOGY, 11(10). doi: 10.1186/gb-2010-11-10-r106.

Josh Starmer - https://www.youtube.com/watch?v=UFB993xufUU

Use it!

1. Clone it somewhere, navigate to root directory.
2. Install it pip install .
3. from morp import morp
4. normalised = morp.MORP(your_counts_matrix) Note: Rows = Genes, Columns = Samples.
5. normalised.mor for normalised counts. normalised.gm for geometric means used in calculation.