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conform-gt 24May16 #1692

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May 21, 2024
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conform-gt 24May16 #1692

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26 changes: 26 additions & 0 deletions Formula/conform-gt.rb
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Original file line number Diff line number Diff line change
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class ConformGt < Formula
desc "Modify target VCF so that its records are consistent with reference VCF"
homepage "https://faculty.washington.edu/browning/conform-gt.html"
url "https://faculty.washington.edu/browning/conform-gt/conform-gt.24May16.cee.src.zip"
version "24May16"
sha256 "fb9daa6008dbdc3e130caf7abd123c63f875c6f9189a76ce00fe846f4c6ba489"
license "Apache-2.0"

depends_on "openjdk"

def install
chdir ".." do
system "#{Formula["openjdk"].bin}/javac", "-cp", "src/", "src/conform/ConformMain.java"
system "#{Formula["openjdk"].bin}/jar", "-cfe", "conform-gt.jar", "conform.ConformMain", "-C", "src/", "."

libexec.install "conform-gt.jar"
bin.write_jar_script libexec/"conform-gt.jar", "conform-gt"
end
end

test do
assert_predicate bin/"conform-gt", :executable?
assert_predicate libexec/"conform-gt.jar", :exist?
assert_match "usage: java -jar conform-gt.", shell_output("#{bin}/conform-gt")
end
end
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