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error in output_JAGS(jags.1, mix, source, output_options) #364

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Xc-Qin opened this issue Dec 30, 2023 · 1 comment
Open

error in output_JAGS(jags.1, mix, source, output_options) #364

Xc-Qin opened this issue Dec 30, 2023 · 1 comment

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@Xc-Qin
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Xc-Qin commented Dec 30, 2023

output_options <- list(summary_save = TRUE,

  •                    summary_name = "summary_statistics",
    
  •                    sup_post = FALSE,
    
  •                    plot_post_save_pdf = TRUE,
    
  •                    plot_post_name = "posterior_density",
    
  •                    sup_pairs = FALSE,
    
  •                    plot_pairs_save_pdf = TRUE,
    
  •                    plot_pairs_name = "pairs_plot",
    
  •                    sup_xy = TRUE,
    
  •                    plot_xy_save_pdf = FALSE,
    
  •                    plot_xy_name = "xy_plot",
    
  •                    gelman = TRUE,
    
  •                    heidel = FALSE,
    
  •                    geweke = TRUE,
    
  •                    diag_save = TRUE,
    
  •                    diag_name = "diagnostics",
    
  •                    indiv_effect = FALSE,
    
  •                    plot_post_save_png = FALSE,
    
  •                    plot_pairs_save_png = FALSE,
    
  •                    plot_xy_save_png = FALSE,
    
  •                    diag_save_ggmcmc = FALSE)
    

output_JAGS(jags.1, mix, source, output_options)
Error in UseMethod("depth") :
no applicable method for 'depth' applied to an object of class "NULL"
In addition: Warning messages:
1: In par(usr) : argument 1 does not name a graphical parameter
2: In par(usr) : argument 1 does not name a graphical parameter
3: In par(usr) : argument 1 does not name a graphical parameter
4: In par(usr) : argument 1 does not name a graphical parameter
5: In par(usr) : argument 1 does not name a graphical parameter
6: In par(usr) : argument 1 does not name a graphical parameter
7: The dot-dot notation (..scaled..) was deprecated in ggplot2 3.4.0.
ℹ Please use after_stat(scaled) instead.
ℹ The deprecated feature was likely used in the MixSIAR package.
Please report the issue at https://github.com/brianstock/MixSIAR/issues.
This warning is displayed once every 8 hours.
Call lifecycle::last_lifecycle_warnings() to see where this warning was generated.

@nattycep
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I also got this error. I'm not sure how to proceed.

output_JAGS(jags.1, mix, source)
Error in UseMethod("depth") :
no applicable method for 'depth' applied to an object of class "NULL"
In addition: Warning messages:
1: In par(usr) : argument 1 does not name a graphical parameter
2: In par(usr) : argument 1 does not name a graphical parameter
3: In par(usr) : argument 1 does not name a graphical parameter
4: The dot-dot notation (..scaled..) was deprecated in ggplot2 3.4.0.
ℹ Please use after_stat(scaled) instead.
ℹ The deprecated feature was likely used in the MixSIAR package.
Please report the issue at https://github.com/brianstock/MixSIAR/issues.
This warning is displayed once every 8 hours.
Call lifecycle::last_lifecycle_warnings() to see where this warning was generated.

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