This is exemplar code for creating figures within the manuscript "Beyond taxonomic identification: integration of ecological responses to a soil bacterial 16S rRNA gene database." Currently accessible at https://www.biorxiv.org/content/10.1101/843847v3.
Issues over the licensing of metadata mean we can not provide fully reproducible code working off the real data. The following scripts are therefore meant as generalised guides to illustrate the processes used and may assist in applying to different datasets. Please contact brionyjones28@gmail.com or rig@ceh.ac.uk for more information or for clarity.