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Sequences with missing amino acids/incorrect ANARCI extraction contain the string "nan" #2

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MiguelHK opened this issue Apr 18, 2024 · 0 comments

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@MiguelHK
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Hello! I would like kindly inform that I have found some sequences in AntiRef that contain the string "nan". I believe this is due to how the sequences are reconstructed with pandas. The total number of sequences with the string "nan" are:

  • AntiRef100: 21,284
  • AntiRef90: 10,335

The code used to find these sequences was the following:
grep 'nan' /home/ubuntu/MHK/antiref/<antiref_file> | grep -v '^>' | wc -l

@MiguelHK MiguelHK changed the title Sequences with missing nucleotides contain the string "nan" Sequences with missing amino acids contain the string "nan" Apr 18, 2024
@MiguelHK MiguelHK changed the title Sequences with missing amino acids contain the string "nan" Sequences with missing amino acids/incorrect ANARCI extraction contain the string "nan" Apr 18, 2024
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