Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Resubmission: Save output dataframe as HDF5, not Pickle #49

Merged
merged 9 commits into from
Apr 21, 2020

Conversation

julianhess
Copy link
Collaborator

I was having issues with reading Pickles from a buffer — as updated in ee64193, in order to accommodate multiple backends, the output Pickle is now read via a transport, rather than with a simple pd.read_pickle("filename") call.

HDF5 is more amenable to being read/written via buffers, so I've switched over. Also, HDF5 ought to be a more stable serialization format — people have reported that the Pickle spec often introduces breaking changes.

@coveralls
Copy link

coveralls commented Apr 2, 2020

Coverage Status

Coverage increased (+0.002%) to 59.525% when pulling 0ab18ee on julianhess:hdf5 into bdfaaec on broadinstitute:master.

@agraubert agraubert merged commit 15e7dc5 into getzlab:master Apr 21, 2020
@julianhess julianhess deleted the hdf5 branch September 2, 2020 19:21
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

None yet

3 participants