Popular repositories

1. rnaseqc rnaseqc Public

   Fast, efficient RNA-Seq metrics for quality control and process optimization

   C++ 142 19

2. SignatureAnalyzer SignatureAnalyzer Public

   Updated SignatureAnalyzer-GPU with mutational spectra & RNA expression compatibility.

   Python 68 20

3. deTiN deTiN Public

   DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated matched control.

   Jupyter Notebook 48 21

4. MutSig2CV MutSig2CV Public

   MutSig2CV from Lawrence et al. 2014

   MATLAB 28 7

5. dalmatian dalmatian Public

   dalmatian is a collection of high-level companion functions for Firecloud and FISS.

   Python 18 13

6. CPTAC_PanCan_PTM_2023 CPTAC_PanCan_PTM_2023 Public

   Jupyter Notebook 14 1