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CMakeLists.txt
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CMakeLists.txt
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set(SOURCE_FILES
base_quals.cpp
base_quals.h
cigar.cpp
cigar.h
exceptions.h
fastq.cpp
fastq.h
fastq_iterator.cpp
fastq_iterator.h
fastq_reader.cpp
fastq_reader.h
gamgee.h
genotype.cpp
genotype.h
indexed_sam_iterator.cpp
indexed_sam_iterator.h
indexed_sam_reader.h
indexed_variant_iterator.cpp
indexed_variant_iterator.h
indexed_variant_reader.h
individual_field.h
individual_field_iterator.h
individual_field_value.h
individual_field_value_iterator.h
interval.cpp
interval.h
missing.h
multiple_variant_iterator.cpp
multiple_variant_iterator.h
multiple_variant_reader.h
read_bases.cpp
read_bases.h
read_group.cpp
read_group.h
reference_iterator.cpp
reference_iterator.h
reference_map.cpp
reference_map.h
sam_builder.cpp
sam_builder_data_field.cpp
sam_builder_data_field.h
sam_builder.h
sam.cpp
sam.h
sam_header.cpp
sam_header.h
sam_iterator.cpp
sam_iterator.h
sam_pair_iterator.cpp
sam_pair_iterator.h
sam_reader.h
sam_tag.h
sam_writer.cpp
sam_writer.h
shared_field.h
shared_field_iterator.h
synced_variant_iterator.cpp
synced_variant_iterator.h
synced_variant_reader.h
utils/file_utils.cpp
utils/file_utils.h
utils/genotype_utils.cpp
utils/genotype_utils.h
utils/hts_memory.cpp
utils/hts_memory.h
utils/short_value_optimized_storage.h
utils/utils.cpp
utils/utils.h
utils/variant_field_type.cpp
utils/variant_field_type.h
utils/variant_utils.cpp
utils/variant_utils.h
variant_builder.cpp
variant_builder.h
variant_builder_individual_field.h
variant_builder_individual_region.cpp
variant_builder_individual_region.h
variant_builder_shared_region.cpp
variant_builder_shared_region.h
variant.cpp
variant_filters.h
variant_filters_iterator.h
variant.h
variant_header_builder.cpp
variant_header_builder.h
variant_header.cpp
variant_header.h
variant_iterator.cpp
variant_iterator.h
variant_reader.h
variant_writer.cpp
variant_writer.h
zip.h
)
add_library(gamgee STATIC ${SOURCE_FILES})