@broadinstitute

Broad Institute

Broad Institute of MIT and Harvard

  • Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

    Scala 322 93 Updated Oct 23, 2018
  • A collection of Python APIs for interacting with the Cromwell

    Jupyter Notebook 6 3 BSD-3-Clause 4 issues need help Updated Oct 23, 2018
  • Official code repository for GATK versions 4 and up

    Java 481 194 BSD-3-Clause 9 issues need help Updated Oct 23, 2018
  • Rawls service for DSDE

    Scala 11 2 Updated Oct 22, 2018
  • Viral genomics analysis pipelines

    Python 82 31 2 issues need help Updated Oct 23, 2018
  • Python 17 2 Updated Oct 22, 2018
  • FireCloud user interface for web browsers.

    Clojure 17 6 BSD-3-Clause Updated Oct 22, 2018
  • Reasoner

    Python 2 Updated Oct 22, 2018
  • Optimal transport for time-course single cell data

    Python 7 2 BSD-3-Clause Updated Oct 22, 2018
  • dig-loam-stream

    Scala Updated Oct 22, 2018
  • A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

    Java 408 249 MIT Updated Oct 22, 2018
  • A package for designing compact and comprehensive probe sets.

    Python 9 1 MIT Updated Oct 22, 2018
  • GTEx Visualizations

    JavaScript 3 BSD-3-Clause Updated Oct 22, 2018
  • additional examples for use with inferCNV

    R Updated Oct 22, 2018
  • Rails/Docker application for the Broad Institute's single cell RNA-seq data portal

    Ruby 17 10 BSD-3-Clause Updated Oct 22, 2018
  • workbench identity and access management

    Scala 6 2 BSD-3-Clause Updated Oct 20, 2018
  • Workbench utility libraries

    Scala 3 2 Updated Oct 19, 2018
  • Scripts / pipelines for slurping external datasets into Broad data repositories.

    Scala 1 Updated Oct 19, 2018
  • Inferring CNV from Single-Cell RNA-Seq

    R 52 25 Updated Oct 19, 2018
  • Scala 17 BSD-3-Clause Updated Oct 19, 2018
  • Easy batch submission of adhoc jobs onto GCP

    Python 3 1 Updated Oct 19, 2018
  • Python Updated Oct 19, 2018
  • Scala 1 BSD-3-Clause Updated Oct 19, 2018
  • Python 1 Updated Oct 18, 2018
  • Command line argument parser and online documentation generation utilities for java command line programs.

    Java 5 2 BSD-3-Clause Updated Oct 18, 2018
  • Diabetes portal for the Medical Population Genetics department at the Broad Institute

    JavaScript 3 3 Updated Oct 18, 2018
  • DSDE Deep Learning Club

    Python 28 3 Updated Oct 17, 2018
  • 🍻 Core formulae for the Homebrew package manager

    Ruby 5,118 BSD-2-Clause Updated Oct 17, 2018
  • Shell Updated Oct 17, 2018
  • NCATS Translator Indigo Team GUI

    Scala Updated Oct 16, 2018