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Note about citing clue.io #1

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shntnu opened this issue Feb 19, 2020 · 2 comments
Closed

Note about citing clue.io #1

shntnu opened this issue Feb 19, 2020 · 2 comments

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@shntnu
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shntnu commented Feb 19, 2020

We concluded that it is ok to have Level 3-5 data on GitHub, although we will cite clue.io as the primary source and references for this data, similar to this README by @gwaygenomics

The following data will eventually be made available on clue.io/morphology

Level 1-5 + connectivity file of

  • REP (1571 compounds, A549, 48h, 6 doses)
  • LKCP (~360 compounds, MCF7/A549/U2OS, 6h/24h/48h, 3 doses)
  • DBG (a subset of LKCP)
@gwaybio
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gwaybio commented Feb 19, 2020

Can I clarify what the different data levels are? Is this accurate?

Data Level
Images Level 1
SQLite File (single cell profiles ) Level 2
Aggregated Profiles with Well Information (metadata) Level 3
Normalized Aggregated Profiles with Metadata Level 4a
Normalized and Feature Selected Aggregated Profiles with Metadata Level 4b
Perturbation Profiles created Summarizing Replicates Level 5

@shntnu
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shntnu commented Feb 19, 2020

Can I clarify what the different data levels are? Is this accurate?

I have updated your table @gwaygenomics

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