Robbie Conner

[springday101]

compbio2021/KEY-MSA-walkthrough-shroom.Rmd

Line 284 in 4fc22d2

>"90% of data analysis is data cleaning" (-Just about every data analyst and data scientist)

Code by Nathan Brouwer.
When you say that the fetch function is "cleaning" the data, do you mean that it is consolidating all of the data into smaller groups based on certain categories? Or, is it somehow editing the data into a more understandable format?

[brouwern]

In this case cleaning refers to elements of each FASTA sequence that are being removed This is done by fasta_cleaner The fetch and fertch_list functions just get the raw sequences, the same as if you copy and pasted them from the website.

On Sat, Oct 2, 2021 at 7:35 PM springday101 ***@***.***> wrote: https://github.com/brouwern/compbio2021/blob/4fc22d26cd66119a177fd9572bd409ffa989216d/KEY-MSA-walkthrough-shroom.Rmd#L284 Code by Nathan Brouwer. When you say that the fetch function is "cleaning" the data, do you mean that it is consolidating all of the data into smaller groups based on certain categories? Or, is it somehow editing the data into a more understandable format? — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#25>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AB32NEYLYXY526TA5FTQ3TDUE6JNJANCNFSM5FG5GO7A> .

-- Nathan L. Brouwer, PhD ***@***.*** *Lecturer* Department of Biological Sciences <https://www.biology.pitt.edu/> University of Pittsburgh Biostatistics course: brouwern.github.io/BIOSC_1120/index.html *Research Associate * National Aviary, Dept. of Conservation & Field Research <https://www.aviary.org/conservation> R code: github.com/brouwern R tweets: @lobrowR <https://twitter.com/lobrowR>