CLEANUP: make new finite-window docs build

brunobeltran · Dec 14, 2020 · 5ba5899 · 5ba5899
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diff --git a/doc/source/finite-window.ipynb b/doc/source/finite-window.ipynb
diff --git a/doc/source/index.rst b/doc/source/index.rst
@@ -18,8 +18,7 @@ comparing these to established analytical diffusion theory.
 To compute MSDs, velocity correlations, and other time-dependent moments of the
 trajectory, see :ref:`Trajectory Statistics <stats>`. For
 computing waiting times—given a trajectory that can take multiple different
-states (such as "paired" and "unpaired")—see :ref:`Waiting Times
-<finite_window>`. For examples of comparing
+states (such as "paired" and "unpaired")—see `Waiting Times`_. For examples of comparing
 the analytical theory of (polymer) diffusions to the data, see :ref:`Analytical
 Theory <theory>`. Custom plotting code used in the :ref:`theory <theory>`
 section is documented in our :ref:`plotting guide <plots>`, but for actual
@@ -45,3 +44,5 @@ Indices and tables
 * :ref:`genindex`
 * :ref:`modindex`
 * :ref:`search`
+
+.. _Waiting Times: finite-window.ipynb
diff --git a/doc/source/Nuclear Radii.ipynb → notebooks/Nuclear Radii.ipynb b/doc/source/Nuclear Radii.ipynb → notebooks/Nuclear Radii.ipynb
diff --git a/doc/source/ms(c)d.ipynb → notebooks/ms(c)d.ipynb b/doc/source/ms(c)d.ipynb → notebooks/ms(c)d.ipynb
diff --git a/doc/source/pnas-figures.ipynb → notebooks/pnas-figures.ipynb b/doc/source/pnas-figures.ipynb → notebooks/pnas-figures.ipynb