gzfile

Conveniently (and with decent performance) read and write data from gzip files directly. Useful for text or very large files.

Implemented as an FFI wrapper for zlib, including wrappers for C FILE functions like fscanf and fwrite. More can be easily added.

Install:

luarocks install https://raw.githubusercontent.com/bshillingford/lua_gzipfile/master/gzfile-scm-1.rockspec

Example:

Read 200 floats from a gzipped file directly into a torch tensor:

require 'torch'
local GZFile = require 'gzfile.GZFile'

local tensor = torch.FloatTensor(200)
local f = GZFile('floats.gz', 'rb')
f:readbuf(tensor:data(), 200*4)  -- sizeof(float)=4; read 200*4 bytes
f:close()
-- now do stuff with the tensor

Note: compressing floats can be useful for neural nets, since similar values at similar orders of magnitude will often results in repeated byte patterns.

To access the underlying FILE* handle, use the handle property of GZFile.

Functions implemented:

• Constructor: file = GZFile(filename, mode) Opens the file for reading or writing using the given mode. See zlib gzopen() documentation for supported modes.
• :close() Closes the file. Later operations will fail.
• :write(str) Writes a lua string. Doesn't allocate memory, just casts using ffi. Calls fwrite and returns its ret val, i.e. number of bytes written.
• :read(nbytes) Reads to a buffer then turns into a lua string. Allocates memory on each call, so slightly inefficient if you do many reads.
• :writebuf(ptr, nbytes) Writes data from the given buffer to the file. Returns number of bytes written.
• :readbuf(ptr, nbytes) Reads into the given location in memory. Returns number of bytes read.
• :flush()
• :peek()
• :tell() Returns the position in the file using ftell.
• :seek(offset, origin) Seek using fseek, relative to beginning of file. Note the argument order matches C's rather than Lua's io. Returns new position from ftell.
• :getc()
• :scanf(fmt, typestring) Calls fscanf, but only for reading a single field e.g. %s. Allocates memory automatically, this memory will be gc'd by lua. Typestring examples: 'float[1]', 'uint8_t[1]', 'char[16]'.