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.gitignore
.gitignore
 
 
KNOSSOSCubeGeneratorGenerateCubesFromMatVar.m
KNOSSOSCubeGeneratorGenerateCubesFromMatVar.m
 
 
KNOSSOS_copy_cube_subset.m
KNOSSOS_copy_cube_subset.m
 
 
KNOSSOS_cubeGenerator_generateCubesFromXLSfile.m
KNOSSOS_cubeGenerator_generateCubesFromXLSfile.m
 
 
KNOSSOS_cubeGenerator_generateXLSfile.m
KNOSSOS_cubeGenerator_generateXLSfile.m
 
 
LICENSE
LICENSE
 
 
README.md
README.md
 
 
RipleysK3D.m
RipleysK3D.m
 
 
blockWiseComponentAccumulator.m
blockWiseComponentAccumulator.m
 
 
btek_marked_gt.txt
btek_marked_gt.txt
 
 
calculateDetectionBbx.m
calculateDetectionBbx.m
 
 
calculateInRadiusPix.m
calculateInRadiusPix.m
 
 
calculatetrainingdataratio.m
calculatetrainingdataratio.m
 
 
callExtractVOI.m
callExtractVOI.m
 
 
cleanSomaDetection.m
cleanSomaDetection.m
 
 
cleanSomaDetectionbyCC.m
cleanSomaDetectionbyCC.m
 
 
cleanSomaDetectionbySlice.m
cleanSomaDetectionbySlice.m
 
 
compareCube2GT.m
compareCube2GT.m
 
 
componentWiseFiltering.m
componentWiseFiltering.m
 
 
createTestHDF.m
createTestHDF.m
 
 
dumpDetections2File.m
dumpDetections2File.m
 
 
dumpFeatures2File.m
dumpFeatures2File.m
 
 
evaluateNucleiDetection.m
evaluateNucleiDetection.m
 
 
evaluateNucleiDetection2.m
evaluateNucleiDetection2.m
 
 
evaluateWithCenters.m
evaluateWithCenters.m
 
 
extractSomaGTVOIs.m
extractSomaGTVOIs.m
 
 
getGTInROI.m
getGTInROI.m
 
 
geth5VOI.m
geth5VOI.m
 
 
gtintereal20130506.mat
gtintereal20130506.mat
 
 
gtintereal20130506_11_02_14.mat
gtintereal20130506_11_02_14.mat
 
 
gtintereal20130506_12_10_13.mat
gtintereal20130506_12_10_13.mat
 
 
ilastikevaluatesoma_simple.m
ilastikevaluatesoma_simple.m
 
 
ilastikevaluatesoma_training.m
ilastikevaluatesoma_training.m
 
 
ilastikevaluatesoma_whole.m
ilastikevaluatesoma_whole.m
 
 
ilastikevaluatesoma_whole_post_classifier.m
ilastikevaluatesoma_whole_post_classifier.m
 
 
loadilastikoutput.m
loadilastikoutput.m
 
 
nml2array.m
nml2array.m
 
 
nnDistance3D.m
nnDistance3D.m
 
 
parseNML.m
parseNML.m
 
 
plotNNDist.m
plotNNDist.m
 
 
plotPaperHistograms.m
plotPaperHistograms.m
 
 
plotResultHistograms.m
plotResultHistograms.m
 
 
plotScatters.m
plotScatters.m
 
 
reconstructDetMask.m
reconstructDetMask.m
 
 
reconstructDetMaskToHdf5.m
reconstructDetMaskToHdf5.m
 
 
reconstructGTMask.m
reconstructGTMask.m
 
 
reconstructGTMasktoHDF5.m
reconstructGTMasktoHDF5.m
 
 
reconstructGTMasktoHDF5Spheres.m
reconstructGTMasktoHDF5Spheres.m
 
 
removeEdgeTouching.m
removeEdgeTouching.m
 
 
updateSomaGT.m
updateSomaGT.m
 
 
writeCCFeaturesToHDF5.m
writeCCFeaturesToHDF5.m
 
 
writeEvaluationResults2TextFile.m
writeEvaluationResults2TextFile.m
 
 
writeMatlabCubeToHDF5inXYZOrder.m
writeMatlabCubeToHDF5inXYZOrder.m
 
 
writeXYZR2txt.m
writeXYZR2txt.m
 
 

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soma-nuclei-matlab

This has the soma nucleus detection codes of matlab

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This has the soma nucleus detection codes of matlab

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