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Pinned

  1. hplcColAnalysis hplcColAnalysis Public

    Various scripts used for analyzing a dataset examining the sequencing depth of LC/MS experiments employing 3 different HPLC column configurations

    R

  2. Scrapers Scrapers Public

    Webscraping tools for various proteomic data repositories

    Python

  3. Jg1Analysis Jg1Analysis Public

    Various Perl and R scripts for reformatting and visualizing a phosphoproteomic dataset investigating PLCg1-deficient T cells

    R

  4. automatePipeline-autoLoad automatePipeline-autoLoad Public

    Java client receiving raw files & Mascot results from autoLoad. Triggers data quantitation and validation, then initiates import of data into Peptide Depot.

    Java 2

  5. splicingQTL splicingQTL Public

    Scripts for identifying & analyzing splicingQTLs using FastQTL

    R

  6. ancestry_pca ancestry_pca Public

    Scripts for performing and visualizing PCA on the genotypes of a user-supplied dataset merged with the 1kg phase 3 genotype data. Requires plink.

    Shell