minor things

bvilhjal · Mar 15, 2019 · 51e36d9 · 51e36d9
1 parent a14c36f
commit 51e36d9
Showing 1 changed file with 4 additions and 3 deletions.
diff --git a/ldpred/sum_stats_parsers.py b/ldpred/sum_stats_parsers.py
@@ -168,7 +168,7 @@ def parse_sum_stats_custom(filename=None, bimfile=None, only_hm3=False, hdf5_fil
         for line in f:
             line_i +=1
             if line_i%1000==0 and num_lines>0:
-                sys.stdout.write('\b\b\b\b\b\b\b%0.2f%%' % (100.0 * (float(line_i) / (num_lines-1.0))))
+                sys.stdout.write('\b\b\b\b\b\b\b%0.2f%%' % (100.0 * (float(line_i) / (num_lines))))
                 sys.stdout.flush()            
             if is_gz(filename):
                 line = line.decode('utf-8')
@@ -268,8 +268,9 @@ def parse_sum_stats_custom(filename=None, bimfile=None, only_hm3=False, hdf5_fil
                     chrom_dict[chrom]['betas'].append(beta / sp.sqrt(N))
 
         if len(bad_chromosomes) > 0:
-            print('Ignored chromosomes: %s' % (','.join(list(bad_chromosomes))))
-            print('Please note that only data on chromosomes 1-23, and X are parsed.')
+            if debug:
+                print('Ignored chromosomes: %s' % (','.join(list(bad_chromosomes))))
+                print('Please note that only data on chromosomes 1-23, and X are parsed.')
 
     if num_lines>0:
         sys.stdout.write('\b\b\b\b\b\b\b%0.2f%%\n' % (100.0))