An R package for fast and memory-efficient computation of thresholded correlation matrices
A preprint of the companion note is available from http://arxiv.org/abs/1512.07246.
The package depends on the
packages, each available on CRAN.
You can install
tcor using the
The algorithm can optionally make use of
foreach package "back-ends" to run
in parallel Many are available, including
See the CRAN high performance computing task view for more info
See the vignette https://github.com/bwlewis/tcor/blob/master/vignettes/brca.Rmd for an example that uses tcor to compute the most correlated gene expression vectors from TCGA RNASeq data.