FeatureCounts

basic featureCounts cwl (v1.0) commandline tool for use in cwl workflows

Using subread-1.5.2 (see references + executable)

References:

Liao Y, Smyth GK and Shi W. featureCounts: an efficient general-purpose program for assigning sequence reads to genomic features. Bioinformatics, 30(7):923-30, 2014