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[infrastructure] Improve Python build process #496

Merged
merged 94 commits into from
May 13, 2024
Merged

[infrastructure] Improve Python build process #496

merged 94 commits into from
May 13, 2024

Commits on May 10, 2024

  1. first step, make sure dependencies are tracked

    @akotlar
    akotlar committed May 10, 2024
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Commits on May 11, 2024

  1. fix

    @akotlar
    akotlar committed May 11, 2024
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  2. add CI

    @akotlar
    akotlar committed May 11, 2024
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  3. switch to pyproject.toml for dependency management

    @akotlar
    akotlar committed May 11, 2024
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  4. remove cython from main dependencies

    @akotlar
    akotlar committed May 11, 2024
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  5. add back rlib

    @akotlar
    akotlar committed May 11, 2024
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  6. fix

    @akotlar
    akotlar committed May 11, 2024
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  7. fix

    @akotlar
    akotlar committed May 11, 2024
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  8. fix

    @akotlar
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  9. fix

    @akotlar
    akotlar committed May 11, 2024
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  10. fix

    @akotlar
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  11. fix

    @akotlar
    akotlar committed May 11, 2024
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  12. rename CI

    @akotlar
    akotlar committed May 11, 2024
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  13. try to debug why pytest isn't working

    @akotlar
    akotlar committed May 11, 2024
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  14. debug

    @akotlar
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  15. fix

    @akotlar
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  16. fix

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  17. fix

    @akotlar
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  18. fix

    @akotlar
    akotlar committed May 11, 2024
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  19. fix

    @akotlar
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  20. fix

    @akotlar
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  21. fix

    @akotlar
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  22. fix

    @akotlar
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  23. fix

    @akotlar
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  24. fix

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  25. fix

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  26. fix

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  27. fix

    @akotlar
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  28. fix

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  29. fix

    @akotlar
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  30. fix

    @akotlar
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  31. fix

    @akotlar
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  32. fix

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  33. attempt to start over

    @akotlar
    akotlar committed May 11, 2024
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  34. 3.11

    @akotlar
    akotlar committed May 11, 2024
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  35. put python version

    @akotlar
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  36. fix

    @akotlar
    akotlar committed May 11, 2024
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  37. remove wheel upload until we fix pytest

    @akotlar
    akotlar committed May 11, 2024
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  38. fix

    @akotlar
    akotlar committed May 11, 2024
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  39. temp fix for rust import issue

    @akotlar
    akotlar committed May 11, 2024
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  40. add ray start

    @akotlar
    akotlar committed May 11, 2024
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  41. attempt at fixing macos test runner

    @akotlar
    akotlar committed May 11, 2024
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  42. add more debug info and attempt to fix runner

    @akotlar
    akotlar committed May 11, 2024
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  43. attempt fix macos runner, reduce number of targets

    @akotlar
    akotlar committed May 11, 2024
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  44. add wheel

    @akotlar
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  45. uprev ray for better windows compat, try macos-13

    @akotlar
    akotlar committed May 11, 2024
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  46. fix

    @akotlar
    akotlar committed May 11, 2024
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  47. downrev ray, since 2.21 not available on windows, add back wheel upload

    @akotlar
    akotlar committed May 11, 2024
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  48. rename CI

    @akotlar
    akotlar committed May 11, 2024
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  49. cleanup

    @akotlar
    akotlar committed May 11, 2024
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  50. cleanup rust imports

    @akotlar
    akotlar committed May 11, 2024
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  51. fix wheel upload

    @akotlar
    akotlar committed May 11, 2024
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  52. stop building wheel in conda-build

    @akotlar
    akotlar committed May 11, 2024
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  53. fixes

    @akotlar
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  54. fix

    @akotlar
    akotlar committed May 11, 2024
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  55. fix

    @akotlar
    akotlar committed May 11, 2024
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  56. attempted fix

    @akotlar
    akotlar committed May 11, 2024
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  57. attempt to fix __init__.py

    @akotlar
    akotlar committed May 11, 2024
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  58. attempt to fix timer test to account for github action overhead

    @akotlar
    akotlar committed May 11, 2024
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  59. fix formatting issue

    @akotlar
    akotlar committed May 11, 2024
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  60. fix formatting issue

    @akotlar
    akotlar committed May 11, 2024
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  61. attempt at fixing lint.yml error

    @akotlar
    akotlar committed May 11, 2024
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  62. print out mypy version and verbose mypy output

    @akotlar
    akotlar committed May 11, 2024
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  63. remove cache for now

    @akotlar
    akotlar committed May 11, 2024
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  64. remove verbose

    @akotlar
    akotlar committed May 11, 2024
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  65. attempt to just install requirements, see if that fixes things

    @akotlar
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  66. attempt to fix lint.yml using requirements.txt

    @akotlar
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  67. remove requirements.txt, didn't fix the issue

    @akotlar
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  68. fix clean_dosage_for_analysis

    @akotlar
    akotlar committed May 11, 2024
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  69. switch to using maturin develop in initialization script

    @akotlar
    akotlar committed May 11, 2024
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  70. fix duplicate ray start

    @akotlar
    akotlar committed May 11, 2024
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  71. add python version to cache key

    @akotlar
    akotlar committed May 11, 2024
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  72. improve installation instructions and remove windows wheel testing as… 

    … Ray does not yet fully support windows
    @akotlar
    akotlar committed May 11, 2024
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  73. merge master

    @akotlar
    akotlar committed May 11, 2024
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  74. fix formatting of INSTALL.md

    @akotlar
    akotlar committed May 11, 2024
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  75. improve clarity of INSTALL.md

    @akotlar
    akotlar committed May 11, 2024
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  76. cleanup

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  77. further cleanup

    @akotlar
    akotlar committed May 11, 2024
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  78. attempt to add aarch64 for linux builds

    @akotlar
    akotlar committed May 11, 2024
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  79. restore maturin config for aarch64

    @akotlar
    akotlar committed May 11, 2024
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Commits on May 12, 2024

  1. attempt to install python 3.11 on aarch64 linux

    @akotlar
    akotlar committed May 12, 2024
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  2. attempt to install python 3.11 on aarch64 linux

    @akotlar
    akotlar committed May 12, 2024
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  3. attempt to install python 3.11 on aarch64 linux

    @akotlar
    akotlar committed May 12, 2024
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  4. attempt to fix

    @akotlar
    akotlar committed May 12, 2024
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  5. fix distro

    @akotlar
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  6. fix distro

    @akotlar
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  7. attempted fix

    @akotlar
    akotlar committed May 12, 2024
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  8. revert more changes

    @akotlar
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  9. try to ensure python 3.11 is used in aarch64 linux build

    @akotlar
    akotlar committed May 12, 2024
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  10. one last attempt at fix for linux aarch64

    @akotlar
    akotlar committed May 12, 2024
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  11. revert attempt to add aarch64

    @akotlar
    akotlar committed May 12, 2024
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  12. fix import order, formatting of domain adaptation module

    @akotlar
    akotlar committed May 12, 2024
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Commits on May 13, 2024

  1. Update README.md 

    Co-authored-by: cristinaetrv <24943967+cristinaetrv@users.noreply.github.com>
    @akotlar @cristinaetrv
    akotlar and cristinaetrv committed May 13, 2024
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  2. merge master

    @akotlar
    akotlar committed May 13, 2024
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