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A short exercise mapping MIMIC.DIAGNOSES_ICD table to the OMOP.CONDITION_OCCURRENCE table.

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Create an ETL Process to Transform a MIMIC-III Table to OMOP

Description:

This is a short exercise mapping MIMIC.DIAGNOSES_ICD table to the OMOP.CONDITION_OCCURRENCE table. The final submission includes:

  1. A Google Presentation slide deck.
  2. A file with SQL code used to transform the source data table into the target table.

The final grade is based on:

  1. Whether one or more MIMIC source table/s are used to map person_id, visit_occurrence_id, and condition_source_value to the OMOP CONDITION_OCCURRENCE target table.
  2. Data profiling results for the MIMIC source table/s specifically addressing the profiling results for the MIMIC SUBJECT_ID frequency.
  3. Mappings and explanations between the MIMIC source table/s and person_id, visit_occurrence_id, and condition_source_value in the OMOP CONDITION_OCCURRENCE target table.
  4. SQL source code to perform the mappings identified in Step 3.
  5. Assessment and explanation for at least one data quality measure/s of the created CONDITION_OCCURRENCE table.

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A short exercise mapping MIMIC.DIAGNOSES_ICD table to the OMOP.CONDITION_OCCURRENCE table.

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