rename fusion colors

cBioPortal · Apr 20, 2021 · 2a4f5dc · 2a4f5dc
1 parent 2dd5776
commit 2a4f5dc
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Showing 3 changed files with 5 additions and 30 deletions.
diff --git a/packages/cbioportal-frontend-commons/src/lib/AlterationColors.ts b/packages/cbioportal-frontend-commons/src/lib/AlterationColors.ts
@@ -8,8 +8,7 @@ export const MUT_COLOR_TRUNC_PASSENGER = '#708090';
 export const MUT_COLOR_SPLICE = '#e5802b';
 export const MUT_COLOR_SPLICE_PASSENGER = '#f0b87b';
 export const STRUCTURAL_VARIANT_COLOR = '#8B00C9';
-export const MUT_COLOR_FUSION = '#8B00C9';
-export const MUT_COLOR_FUSION_PASSENGER = '#ce92e8';
+export const STRUCTURAL_VARIANT_PASSENGER_COLOR = '#ce92e8';
 export const MUT_COLOR_PROMOTER = '#00B7CE';
 export const MUT_COLOR_OTHER = '#cf58bc'; //'#cfb537';
 export const MRNA_COLOR_HIGH = '#ff9999';

diff --git a/packages/react-mutation-mapper/src/util/MutationTypeUtils.ts b/packages/react-mutation-mapper/src/util/MutationTypeUtils.ts
@@ -14,7 +14,7 @@ import {
     MUT_COLOR_INFRAME_PASSENGER,
     MUT_COLOR_TRUNC_PASSENGER,
     MUT_COLOR_SPLICE_PASSENGER,
-    MUT_COLOR_FUSION_PASSENGER,
+    STRUCTURAL_VARIANT_PASSENGER_COLOR,
 } from 'cbioportal-frontend-commons';
 import { Mutation } from 'cbioportal-utils';
 import _ from 'lodash';
@@ -31,7 +31,7 @@ export const DEFAULT_PROTEIN_IMPACT_TYPE_COLORS: IProteinImpactTypeColors = {
     spliceColor: MUT_COLOR_SPLICE,
     spliceVusColor: MUT_COLOR_SPLICE_PASSENGER,
     fusionColor: STRUCTURAL_VARIANT_COLOR,
-    fusionVusColor: MUT_COLOR_FUSION_PASSENGER,
+    fusionVusColor: STRUCTURAL_VARIANT_PASSENGER_COLOR,
     otherColor: MUT_COLOR_OTHER,
 };
 

diff --git a/src/shared/lib/MutationUtils.tsx b/src/shared/lib/MutationUtils.tsx
@@ -13,18 +13,7 @@ import {
     SampleIdentifier,
 } from 'cbioportal-ts-api-client';
 import {
-    MUT_COLOR_INFRAME_PASSENGER,
-    MUT_COLOR_MISSENSE_PASSENGER,
-    MUT_COLOR_SPLICE,
-    MUT_COLOR_SPLICE_PASSENGER,
-    MUT_COLOR_TRUNC_PASSENGER,
     stringListToSet,
-    MUT_COLOR_FUSION,
-    MUT_COLOR_INFRAME,
-    MUT_COLOR_MISSENSE,
-    MUT_COLOR_OTHER,
-    MUT_COLOR_TRUNC,
-    STRUCTURAL_VARIANT_COLOR,
     ProteinImpactType,
     getProteinImpactType,
     DriverVsVusType,
@@ -39,19 +28,6 @@ import { toSampleUuid } from './UuidUtils';
 import { normalizeMutations } from '../components/mutationMapper/MutationMapperUtils';
 import { getSimplifiedMutationType } from './oql/AccessorsForOqlFilter';
 
-export const DEFAULT_PROTEIN_IMPACT_TYPE_COLORS: IProteinImpactTypeColors = {
-    missenseColor: MUT_COLOR_MISSENSE,
-    missenseVusColor: MUT_COLOR_MISSENSE_PASSENGER,
-    inframeColor: MUT_COLOR_INFRAME,
-    inframeVusColor: MUT_COLOR_INFRAME_PASSENGER,
-    truncatingColor: MUT_COLOR_TRUNC,
-    truncatingVusColor: MUT_COLOR_TRUNC_PASSENGER,
-    spliceColor: MUT_COLOR_SPLICE,
-    spliceVusColor: MUT_COLOR_SPLICE_PASSENGER,
-    fusionColor: STRUCTURAL_VARIANT_COLOR,
-    otherColor: MUT_COLOR_OTHER,
-};
-
 export const SELECTOR_VALUE_WITH_VUS = [
     ProteinImpactType.MISSENSE_PUTATIVE_DRIVER,
     ProteinImpactType.MISSENSE_UNKNOWN_SIGNIFICANCE,
@@ -175,7 +151,7 @@ export function getProteinImpactTypeOptionDisplayValueMap(proteinImpactTypeColor
                         ],
                 }}
             >
-                Fusion
+                SV/Fusion
             </strong>
         ),
         [ProteinImpactType.FUSION_UNKNOWN_SIGNIFICANCE]: (
@@ -187,7 +163,7 @@ export function getProteinImpactTypeOptionDisplayValueMap(proteinImpactTypeColor
                         ],
                 }}
             >
-                Fusion
+                SV/Fusion
             </strong>
         ),
         [ProteinImpactType.OTHER]: (