profile the repeat landscape in a genome
Perl
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Latest commit 97b50a5 Sep 9, 2014 @caballero Update README.txt
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README.txt Update README.txt Sep 9, 2014
RepeatLandscape.pl
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README.txt

Repeat Landscape

This is a series of scripts to create stunning visualizations from repeats identified by RepeatMasker, the *.align.out file is parsed and converted to a *.csv file, which can be plotted in stacked-histogram or colour-full pies with R or Google Charts API.

*NOTE: RepeatMasker main package (4.0.5+) contains an updated version of RepeatLandscape under the "utils" directory, you should use that one.

Copyright - Juan Caballero, RepeatMasker.org/Institute for Sytems Biology, 2012