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DESCRIPTION
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DESCRIPTION
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Package: celda
Title: CEllular Latent Dirichlet Allocation
Version: 1.3.1
Authors@R: c(person("Joshua", "Campbell", email = "camp@bu.edu",
role = c("aut", "cre")),
person("Sean", "Corbett", email = "scorbett@bu.edu", role = c("aut")),
person("Yusuke", "Koga", email="ykoga07@bu.edu", role = c("aut")),
person("Shiyi", "Yang", email="syyang@bu.edu", role = c("aut")),
person("Eric", "Reed", email="reeder@bu.edu", role = c("aut")),
person("Zhe", "Wang", email="zhe@bu.edu", role = c("aut")))
Description: celda is a Bayesian hierarchical model that can co-cluster features and cells in single cell sequencing data.
Depends:
R (>= 3.6)
VignetteBuilder: knitr
Imports:
stats,
plyr,
foreach,
ggplot2,
RColorBrewer,
grid,
scales,
gtable,
grDevices,
graphics,
matrixStats,
doParallel,
digest,
gridExtra,
methods,
reshape2,
MAST,
S4Vectors,
data.table,
Rcpp,
RcppArmadillo,
RcppEigen,
uwot,
enrichR,
stringi,
SummarizedExperiment,
MCMCprecision,
ggrepel,
Rtsne,
withr,
dendextend,
ggdendro,
pROC,
magrittr,
scater (>= 1.14.4),
scran,
SingleCellExperiment,
dbscan
Suggests:
testthat,
knitr,
roxygen2,
rmarkdown,
corrplot,
Matrix,
biomaRt,
covr,
M3DExampleData,
BiocManager,
BiocStyle
LinkingTo: Rcpp, RcppArmadillo, RcppEigen
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: false
RoxygenNote: 7.0.2
BugReports: https://github.com/campbio/celda/issues
biocViews: SingleCell, GeneExpression, Clustering, Sequencing, Bayesian