Devel #142
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Devel #142
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Update to vignette
Bioc revision
version bump
version bump
remove example in plotDimReduceGrid
remove examples
remove celdaCGGridSearch example
add (donttest{}) examples
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R/celda_C.R:1142:1: style: Lines should not be more than 80 characters. zInclude <- which(tabulate(clusters(celdaMod)$z, params(celdaMod)$K) > 0)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R/celda_CG.R:1428:1: style: Lines should not be more than 80 characters. zInclude <- which(tabulate(clusters(celdaMod)$z, params(celdaMod)$K) > 0)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R/celda_CG.R:1429:1: style: Lines should not be more than 80 characters. yInclude <- which(tabulate(clusters(celdaMod)$y, params(celdaMod)$L) > 0)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R/model_performance.R:34:49: style: Remove spaces before the left parenthesis in a function call. perpRes <- matrix(NA, nrow = length(resList (celdaList)), ncol = resample)
^R/model_performance.R:100:1: style: Lines should not be more than 80 characters. ix2 <- rep(seq(ncol(celdaPerplexity(celdaList))), nrow(celdaPerplexity(celdaList)))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R/model_performance.R:123:1: style: Lines should not be more than 80 characters. min(runParams(celdaList)$K), max(runParams(celdaList)$K), sep)) +
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R/model_performance.R:172:1: style: Lines should not be more than 80 characters. ix2 <- rep(seq(ncol(celdaPerplexity(celdaList))), nrow(celdaPerplexity(celdaList)))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R/model_performance.R:221:1: style: Lines should not be more than 80 characters. ix2 <- rep(seq(ncol(celdaPerplexity(celdaList))), nrow(celdaPerplexity(celdaList)))
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ |
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R/model_performance.R:34:49: style: Remove spaces before the left parenthesis in a function call. perpRes <- matrix(NA, nrow = length(resList (celdaList)), ncol = resample)
^ |
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