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@cancersysbio

Curtis Lab. Stanford School of Medicine

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  1. SCIMET SCIMET Public

    Spatial Computational Inference of MEtastatic Timing (SCIMET)

    Python 13 12

  2. VirtualTumorEvolution VirtualTumorEvolution Public

    Spatial Simulation of Tumor Growth

    Python 11 11

  3. pan-metastasis pan-metastasis Public

    Python 10 6

  4. mCRCs mCRCs Public

    A computational framework for multi-region exome data analysis

    R 7 8

  5. VAP VAP Public

    Variant Assurance Pipeline

    Perl 6 3

  6. gastric_organoid_evolution gastric_organoid_evolution Public

    Deterministic evolution and stringent selection during pre-neoplasia

    HTML 5 1

Repositories

Showing 10 of 16 repositories
  • germline-epitopes Public

    Scripts for evaluating germline-derived epitopes (Houlahan et al., 2023)

    cancersysbio/germline-epitopes’s past year of commit activity
    R 0 MIT 0 0 0 Updated Mar 19, 2024
  • VAP Public

    Variant Assurance Pipeline

    cancersysbio/VAP’s past year of commit activity
    Perl 6 3 1 0 Updated Oct 13, 2023
  • amplification_outliers Public

    Code to reproduce the paper "Funtional screenings of amplification outlier oncogenes in organoid models of early tumorigenesis"

    cancersysbio/amplification_outliers’s past year of commit activity
    R 0 0 0 0 Updated Sep 27, 2023
  • microwell_NGS Public
    cancersysbio/microwell_NGS’s past year of commit activity
    0 0 0 0 Updated Aug 1, 2023
  • htan-DCIS Public

    Scripts to recapitulate analysis of HTAN DCIS Atlas

    cancersysbio/htan-DCIS’s past year of commit activity
    R 0 0 0 0 Updated Jun 9, 2023
  • gastric_organoid_evolution Public

    Deterministic evolution and stringent selection during pre-neoplasia

    cancersysbio/gastric_organoid_evolution’s past year of commit activity
    HTML 5 1 0 0 Updated Jun 3, 2023
  • cookiecutter-reproducible-science Public Forked from mkrapp/cookiecutter-reproducible-science

    boilerplate for reproducible and transparent science

    cancersysbio/cookiecutter-reproducible-science’s past year of commit activity
    0 76 0 0 Updated Oct 25, 2022
  • chromatinAnthra Public

    Source code from the manuscript "Chromatin Regulators Mediate Anthracycline Sensitivity in Breast Cancer"

    cancersysbio/chromatinAnthra’s past year of commit activity
    R 4 3 0 0 Updated Mar 15, 2022
  • BreastCancerSpatialProteomics Public
    cancersysbio/BreastCancerSpatialProteomics’s past year of commit activity
    Jupyter Notebook 2 5 0 0 Updated Feb 14, 2021
  • AMBRA1_paper Public

    Scripts to reproduce results of "The AMBRA1 E3 ligase adaptor regulates Cyclin D protein stability" Chaikovsky et al. Nature 2021

    cancersysbio/AMBRA1_paper’s past year of commit activity
    R 0 0 0 0 Updated Jan 26, 2021
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