feat!: use OBO release for Mondo #171
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korikuzma
previously approved these changes
Dec 4, 2023
src/disease/etl/mondo.py
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| prefix = NamespacePrefix[xref.id.prefix.upper()] | ||
| except KeyError: | ||
| _logger.warning(f"Unrecognized namespace: {xref.id.prefix}") | ||
| print(xref) |
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A bit more wordy than I'd have liked, but the OBO source data is muuuuch easier to work with (particularly for test data). Might try to move DO and NCIt over to OBO at another time.
Base.load_disease()#173 to continue on it. This is why there are some weird changes to aliases in the test data.