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fix: stricter Mondo xref import rules #86

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merged 19 commits into from
Nov 7, 2022
Merged

fix: stricter Mondo xref import rules #86

merged 19 commits into from
Nov 7, 2022

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jsstevenson
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@jsstevenson jsstevenson commented Oct 31, 2022

close #80

Has a bunch of downstream effects that required fixing, but basically, we were pulling in some fields that are "sibling" concepts rather than "equivalent" concepts. Now we run a SPARQL query at the top of the Mondo import to get equivalency relations. This means dropping some less-than-accurate associated_with references but ensures that normalized groups are a little more airtight.

@jsstevenson jsstevenson marked this pull request as ready for review November 5, 2022 14:34
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@korikuzma korikuzma left a comment

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Small requests

disease/etl/mondo.py Outdated Show resolved Hide resolved
disease/version.py Outdated Show resolved Hide resolved
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Version should be 0.3.1, but if you don't need to release a change we can update it in next issue

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2 participants