PathoImage

Framework for Pathology Image Operations with Deep Learning.

digiPath module includes whole slide image processing operations. -completed

Please see PLAYGROUND_IMAGES.ipynb and Patch_Sampling.ipynb notebooks to see a selection of operations.

deepnets module includes the functionality of finetuning previously trained convnets on breast histopathology images. Alexnet and VGGnets are supported. -ongoing

Supported operations include:

• training convnets from scratch on breast histopathology images.
• finetuning on patches of consensus ROIs of expert pathologists in histopathology images with 2, 4 or 14 class diagnostic labels associated by the pathologists.
• extracting convolutional feature representations of small patches of pathology images from a finetuned convnet.