/
spm_results_ui.m
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spm_results_ui.m
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function varargout = spm_results_ui(varargin)
% User interface for SPM/PPM results: Display and analysis of regional effects
% FORMAT [hReg,xSPM,SPM] = spm_results_ui('Setup',[xSPM])
%
% hReg - handle of MIP XYZ registry object
% (see spm_XYZreg.m for details)
% xSPM - structure containing specific SPM, distribution & filtering details
% (see spm_getSPM.m for contents)
% SPM - SPM structure containing generic parameters
% (see spm_spm.m for contents)
%
% NB: Results section GUI CallBacks use these data structures by name,
% which therefore *must* be assigned to the correctly named variables.
%__________________________________________________________________________
%
% The SPM results section is for the interactive exploration and
% characterisation of the results of a statistical analysis.
%
% The user is prompted to select a SPM{T} or SPM{F}, that is thresholded at
% user specified levels. The specification of the contrasts to use and the
% height and size thresholds are described in spm_getSPM.m. The resulting
% SPM is then displayed in the Graphics window as a maximum intensity
% projection, alongside the design matrix and contrasts employed.
%
% The cursors in the MIP can be moved (dragged) to select a particular
% voxel. The three mouse buttons give different drag and drop behaviour:
% Button 1 - point & drop; Button 2 - "dynamic" drag & drop with
% co-ordinate & SPM value updating; Button 3 - "magnetic" drag & drop,
% where the cursor jumps to the nearest suprathreshold voxel in the MIP,
% and shows the value there.
% See spm_mip_ui.m, the MIP GUI handling function for further details.
%
% The design matrix and contrast pictures are "surfable": Click and drag
% over the images to report associated data. Clicking with different
% buttons produces different results. Double-clicking extracts the
% underlying data into the base workspace.
% See spm_DesRep.m for further details.
%
% The current voxel specifies the voxel, suprathreshold cluster, or
% orthogonal planes (planes passing through that voxel) for subsequent
% localised utilities.
%
% A control panel in the Interactive window enables interactive exploration
% of the results.
%
% p-values buttons:
% (i) volume - Tabulates p-values and statistics for entire volume.
% - see spm_list.m
% (ii) cluster - Tabulates p-values and statistics for nearest cluster.
% - Note that the cursor will jump to the nearest
% suprathreshold voxel, if it is not already at a
% location with suprathreshold statistic.
% - see spm_list.m
% (iii) S.V.C - Small Volume Correction:
% Tabulates p-values corrected for a small specified
% volume of interest. (Tabulation by spm_list.m)
% - see spm_VOI.m
%
% Data extraction buttons:
% Eigenvariate/CVA
% - Extracts the principal eigenvariate for small volumes
% of interest; or CVA of data within a specified volume
% - Data can be adjusted or not for eigenvariate summaries
% - If temporal filtering was specified (fMRI), then it is
% the filtered data that is returned.
% - Choose a VOI of radius 0 to extract the (filtered &)
% adjusted data for a single voxel. Note that this vector
% will be scaled to have a 2-norm of 1. (See spm_regions.m
% for further details.)
% - The plot button also returns fitted and adjusted
% (after any filtering) data for the voxel being plotted.)
% - Note that the cursor will jump to the nearest voxel for
% which raw data was saved.
% - see spm_regions.m
%
% Visualisation buttons:
% (i) plot - Graphs of adjusted and fitted activity against
% various ordinates.
% - Note that the cursor will jump to the nearest
% suprathreshold voxel, if it is not already at a
% location with suprathreshold statistic.
% - Additionally, returns fitted and adjusted data to the
% MATLAB base workspace.
% - see spm_graph.m
% (ii) overlays - Popup menu: Overlays of filtered SPM on a structural image
% - slices - Slices of the thresholded statistic image overlaid
% on a secondary image chosen by the user. Three
% transverse slices are shown, being those at the
% level of the cursor in the z-axis and the two
% adjacent to it. - see spm_transverse.m
% - sections - Orthogonal sections of the thresholded statistic
% image overlaid on a secondary image chosen by the user.
% The sections are through the cursor position.
% - see spm_sections.m
% - render - Render blobs on previously extracted cortical surface
% - see spm_render.m
% (iii) save - Write out thresholded SPM as image
% - see spm_write_filtered.m
%
% The current cursor location can be set by editing the co-ordinate widgets
% at the bottom of the Interactive window. (Note that many of the results
% section facilities are "linked" and can update co-ordinates. E.g.
% clicking on the co-ordinates in a p-value listing jumps to that location.)
%
% Graphics appear in the bottom half of the Graphics window, additional
% controls and questions appearing in the Interactive window.
%
% ----------------
%
% The MIP uses a template outline in MNI space. Consequently for the
% results section to display properly the input images to the statistics
% section should be in MNI space.
%
% Similarly, secondary images should be aligned with the input images used
% for the statistical analysis.
%
% ----------------
%
% In addition to setting up the results section, spm_results_ui.m sets
% up the results section GUI and services the CallBacks. FORMAT
% specifications for embedded CallBack functions are given in the main
% body of the code.
%__________________________________________________________________________
% Copyright (C) 1996-2013 Wellcome Trust Centre for Neuroimaging
% Karl Friston & Andrew Holmes
% $Id: spm_results_ui.m 6416 2015-04-21 15:34:10Z guillaume $
%==========================================================================
% - FORMAT specifications for embedded CallBack functions
%==========================================================================
%( This is a multi function function, the first argument is an action )
%( string, specifying the particular action function to take. )
%
% spm_results_ui sets up and handles the SPM results graphical user
% interface, initialising an XYZ registry (see spm_XYZreg.m) to co-ordinate
% locations between various location controls.
%
%__________________________________________________________________________
%
% FORMAT [hreg,xSPM,SPM] = spm_results_ui('Setup')
% Query SPM and setup GUI.
%
% FORMAT [hreg,xSPM,SPM] = spm_results_ui('Setup',xSPM)
% Query SPM and setup GUI using a xSPM input structure. This allows to run
% results setup without user interaction. See spm_getSPM for details of
% allowed fields.
%
% FORMAT hReg = spm_results_ui('SetupGUI',M,DIM,xSPM,Finter)
% Setup results GUI in Interactive window
% M - 4x4 transformation matrix relating voxel to "real" co-ordinates
% DIM - 3 vector of image X, Y & Z dimensions
% xSPM - structure containing xSPM. Required fields are:
% .Z - minimum of n Statistics {filtered on u and k}
% .XYZmm - location of voxels {mm}
% Finter - handle (or 'Tag') of Interactive window (default 'Interactive')
% hReg - handle of XYZ registry object
%
% FORMAT spm_results_ui('DrawButts',hReg,DIM,Finter,WS,FS)
% Draw GUI buttons
% hReg - handle of XYZ registry object
% DIM - 3 vector of image X, Y & Z dimensions
% Finter - handle of Interactive window
% WS - WinScale [Default spm('WinScale') ]
% FS - FontSizes [Default spm('FontSizes')]
%
% FORMAT hFxyz = spm_results_ui('DrawXYZgui',M,DIM,xSPM,xyz,hReg)
% Setup editable XYZ control widgets at foot of Interactive window
% M - 4x4 transformation matrix relating voxel to "real" co-ordinates
% DIM - 3 vector of image X, Y & Z dimensions
% xSPM - structure containing SPM; Required fields are:
% .Z - minimum of n Statistics {filtered on u and k}
% .XYZmm - location of voxels {mm}
% xyz - Initial xyz location {mm}
% hReg - handle of XYZ registry object
% hFxyz - handle of XYZ control - the frame containing the edit widgets
%
% FORMAT spm_results_ui('EdWidCB')
% Callback for editable XYZ control widgets
%
% FORMAT spm_results_ui('UpdateSPMval',hFxyz)
% FORMAT spm_results_ui('UpdateSPMval',UD)
% Updates SPM value string in Results GUI (using data from UserData of hFxyz)
% hFxyz - handle of frame enclosing widgets - the Tag object for this control
% UD - XYZ data structure (UserData of hFxyz).
%
% FORMAT xyz = spm_results_ui('GetCoords',hFxyz)
% Get current co-ordinates from editable XYZ control
% hFxyz - handle of frame enclosing widgets - the Tag object for this control
% xyz - current co-ordinates {mm}
% NB: When using the results section, should use XYZregistry to get/set location
%
% FORMAT [xyz,d] = spm_results_ui('SetCoords',xyz,hFxyz,hC)
% Set co-ordinates to XYZ widget
% xyz - (Input) desired co-ordinates {mm}
% hFxyz - handle of XYZ control - the frame containing the edit widgets
% hC - handle of calling object, if used as a callback. [Default 0]
% xyz - (Output) Desired co-ordinates are rounded to nearest voxel if hC
% is not specified, or is zero. Otherwise, caller is assumed to
% have checked verity of desired xyz co-ordinates. Output xyz returns
% co-ordinates actually set {mm}.
% d - Euclidean distance between desired and set co-ordinates.
% NB: When using the results section, should use XYZregistry to get/set location
%
% FORMAT hFxyz = spm_results_ui('FindXYZframe',h)
% Find/check XYZ edit widgets frame handle, 'Tag'ged 'hFxyz'
% h - handle of frame enclosing widgets, or containing figure [default gcf]
% If ischar(h), then uses spm_figure('FindWin',h) to locate named figures
% hFxyz - handle of confirmed XYZ editable widgets control
% Errors if hFxyz is not an XYZ widget control, or a figure containing
% a unique such control
%
% FORMAT spm_results_ui('PlotUi',hAx)
% GUI for adjusting plot attributes - Sets up controls just above results GUI
% hAx - handle of axes to work with
%
% FORMAT spm_results_ui('PlotUiCB')
% CallBack handler for Plot attribute GUI
%
% FORMAT Fgraph = spm_results_ui('Clear',F,mode)
% Clears results subpane of Graphics window, deleting all but semi-permanent
% results section stuff
% F - handle of Graphics window [Default spm_figure('FindWin','Graphics')]
% mode - 1 [default] - clear results subpane
% - 0 - clear results subpane and hide results stuff
% - 2 - clear, but respect 'NextPlot' 'add' axes
% (which is set by `hold on`)
% Fgraph - handle of Graphics window
%
% FORMAT hMP = spm_results_ui('LaunchMP',M,DIM,hReg,hBmp)
% Prototype callback handler for integrating MultiPlanar toolbox
%
% FORMAT spm_results_ui('Delete',h)
% deletes HandleGraphics objects, but only if they're valid, thus avoiding
% warning statements from MATLAB.
%__________________________________________________________________________
SVNid = '$Rev: 6416 $';
%-Condition arguments
%--------------------------------------------------------------------------
if nargin == 0, Action='Setup'; else Action=varargin{1}; end
%==========================================================================
switch lower(Action), case 'setup' %-Set up results
%==========================================================================
%-Initialise
%----------------------------------------------------------------------
spm('FnBanner',mfilename,SVNid);
[Finter,Fgraph,CmdLine] = spm('FnUIsetup','Stats: Results');
spm_clf('Satellite');
%-Get thresholded xSPM data and parameters of design
%======================================================================
if nargin > 1
[SPM,xSPM] = spm_getSPM(varargin{2});
else
[SPM,xSPM] = spm_getSPM;
end
if isempty(xSPM)
varargout = {[],[],[]};
return;
end
%-Ensure pwd = swd so that relative filenames are valid
%----------------------------------------------------------------------
cd(SPM.swd)
%-Get space information
%======================================================================
M = SPM.xVol.M;
DIM = SPM.xVol.DIM;
%-Space units
%----------------------------------------------------------------------
try
try
units = SPM.xVol.units;
catch
units = xSPM.units;
end
catch
try
Modality = spm('CheckModality');
catch
Modality = {'PET','FMRI','EEG'};
selected = spm_input('Modality: ','+1','m',Modality);
Modality = Modality{selected};
spm('ChMod',Modality);
end
if strcmp(Modality,'EEG')
datatype = {...
'Volumetric (2D/3D)',...
'Scalp-Time',...
'Scalp-Frequency',...
'Time-Frequency',...
'Frequency-Frequency'};
selected = spm_input('Data Type: ','+1','m',datatype);
datatype = datatype{selected};
else
datatype = 'Volumetric (2D/3D)';
end
switch datatype
case 'Volumetric (2D/3D)'
units = {'mm' 'mm' 'mm'};
case 'Scalp-Time'
units = {'mm' 'mm' 'ms'};
case 'Scalp-Frequency'
units = {'mm' 'mm' 'Hz'};
case 'Time-Frequency'
units = {'Hz' 'ms' ''};
case 'Frequency-Frequency'
units = {'Hz' 'Hz' ''};
otherwise
error('Unknown data type.');
end
end
if spm_mesh_detect(xSPM.Vspm)
DIM(3) = Inf; % force 3D coordinates
elseif DIM(3) == 1
units{3} = '';
if DIM(2) == 1
units{2} = '';
end
end
xSPM.units = units;
SPM.xVol.units = units;
%-Setup Results User Interface; Display MIP, design matrix & parameters
%======================================================================
%-Setup results GUI
%----------------------------------------------------------------------
spm_clf(Finter);
spm('FigName',['SPM{',xSPM.STAT,'}: Results'],Finter,CmdLine);
hReg = spm_results_ui('SetupGUI',M,DIM,xSPM,Finter);
%-Setup design interrogation menu
%----------------------------------------------------------------------
hDesRepUI = spm_DesRep('DesRepUI',SPM);
%-Setup contrast menu
%----------------------------------------------------------------------
hConUI = spm_results_ui('SetupConMenu',xSPM,SPM,Finter);
%-Atlas menu
%----------------------------------------------------------------------
if isequal(units,{'mm' 'mm' 'mm'})
hAtlasUI = spm_results_ui('SetupAtlasMenu',Finter);
end
%-Setup Maximum intensity projection (MIP) & register
%----------------------------------------------------------------------
FS = spm('FontSizes');
hMIPax = axes('Parent',Fgraph,'Position',[0.05 0.60 0.55 0.36],'Visible','off');
if spm_mesh_detect(xSPM.Vspm)
hMax = spm_mesh_render('Disp',SPM.xVol.G,'Parent',hMIPax);
tmp = zeros(1,prod(xSPM.DIM));
tmp(xSPM.XYZ(1,:)) = xSPM.Z;
hMax = spm_mesh_render('Overlay',hMax,tmp);
hMax = spm_mesh_render('Register',hMax,hReg);
elseif isequal(units(2:3),{'' ''})
set(hMIPax, 'Position',[0.05 0.65 0.55 0.25]);
[allS,allXYZmm] = spm_read_vols(xSPM.Vspm);
plot(hMIPax,allXYZmm(1,:),allS,'Color',[0.6 0.6 0.6]);
set(hMIPax,'NextPlot','add');
MIP = NaN(1,xSPM.DIM(1));
MIP(xSPM.XYZ(1,:)) = xSPM.Z;
XYZmm = xSPM.M(1,:)*[1:xSPM.DIM(1);zeros(2,xSPM.DIM(1));ones(1,xSPM.DIM(1))];
plot(hMIPax,XYZmm,MIP,'b-+','LineWidth',2);
plot(hMIPax,[XYZmm(1) XYZmm(end)],[xSPM.u xSPM.u],'r');
clim = get(hMIPax,'YLim');
axis(hMIPax,[sort([XYZmm(1) XYZmm(end)]) 0 clim(2)]);
%set(hMIPax,'XTick',[],'YTick',[]);
else
hMIPax = spm_mip_ui(xSPM.Z,xSPM.XYZmm,M,DIM,hMIPax,units);
spm_XYZreg('XReg',hReg,hMIPax,'spm_mip_ui');
end
if xSPM.STAT == 'P'
str = xSPM.STATstr;
else
str = ['SPM\{',xSPM.STATstr,'\}'];
end
text(240,260,str,...
'Interpreter','TeX',...
'FontSize',FS(14),'Fontweight','Bold',...
'Parent',hMIPax)
%-Print comparison title
%----------------------------------------------------------------------
hTitAx = axes('Parent',Fgraph,...
'Position',[0.02 0.96 0.96 0.04],...
'Visible','off');
text(0.5,0.5,xSPM.title,'Parent',hTitAx,...
'HorizontalAlignment','center',...
'VerticalAlignment','top',...
'FontWeight','Bold','FontSize',FS(14))
%-Print SPMresults: Results directory & thresholding info
%----------------------------------------------------------------------
hResAx = axes('Parent',Fgraph,...
'Position',[0.05 0.55 0.45 0.05],...
'DefaultTextVerticalAlignment','baseline',...
'DefaultTextFontSize',FS(9),...
'DefaultTextColor',[1,1,1]*.7,...
'Units','points',...
'Visible','off');
AxPos = get(hResAx,'Position'); set(hResAx,'YLim',[0,AxPos(4)])
h = text(0,24,'SPMresults:','Parent',hResAx,...
'FontWeight','Bold','FontSize',FS(14));
text(get(h,'Extent')*[0;0;1;0],24,spm_file(SPM.swd,'short30'),'Parent',hResAx)
try
thresDesc = xSPM.thresDesc;
if strcmp(xSPM.STAT,'P')
text(0,12,sprintf('Height threshold %s',thresDesc),'Parent',hResAx)
else
text(0,12,sprintf('Height threshold %c = %0.6f {%s}',xSPM.STAT,xSPM.u,thresDesc),'Parent',hResAx)
end
catch
text(0,12,sprintf('Height threshold %c = %0.6f',xSPM.STAT,xSPM.u),'Parent',hResAx)
end
if spm_mesh_detect(xSPM.Vspm), str = 'vertices'; else str = 'voxels'; end
text(0,00,sprintf('Extent threshold k = %0.0f %s',xSPM.k,str), 'Parent',hResAx)
%-Plot design matrix
%----------------------------------------------------------------------
hDesMtx = axes('Parent',Fgraph,'Position',[0.65 0.55 0.25 0.25]);
hDesMtxIm = image((SPM.xX.nKX + 1)*32,'Parent',hDesMtx);
xlabel(hDesMtx,'Design matrix','FontSize',FS(10))
set(hDesMtxIm,'ButtonDownFcn','spm_DesRep(''SurfDesMtx_CB'')',...
'UserData',struct(...
'X', SPM.xX.xKXs.X,...
'fnames', {reshape({SPM.xY.VY.fname},size(SPM.xY.VY))},...
'Xnames', {SPM.xX.name}))
%-Plot contrasts
%----------------------------------------------------------------------
nPar = size(SPM.xX.X,2);
xx = [repmat([0:nPar-1],2,1);repmat([1:nPar],2,1)];
nCon = length(xSPM.Ic);
xCon = SPM.xCon;
if nCon
dy = 0.15/max(nCon,2);
hConAx = axes('Parent',Fgraph, 'Position',[0.65 (0.80 + dy*.1) 0.25 dy*(nCon-.1)],...
'Tag','ConGrphAx','Visible','off');
str = 'contrast';
if nCon > 1, str = [str 's']; end
title(hConAx,str)
htxt = get(hConAx,'title');
set(htxt,'FontSize',FS(10),'FontWeight','normal','Visible','on','HandleVisibility','on')
end
for ii = nCon:-1:1
hCon = axes('Parent',Fgraph, 'Position',[0.65 (0.80 + dy*(nCon - ii +.1)) 0.25 dy*.9]);
if xCon(xSPM.Ic(ii)).STAT == 'T' && size(xCon(xSPM.Ic(ii)).c,2) == 1
%-Single vector contrast for SPM{t} - bar
%--------------------------------------------------------------
yy = [zeros(1,nPar);repmat(xCon(xSPM.Ic(ii)).c',2,1);zeros(1,nPar)];
h = patch(xx,yy,[1,1,1]*.5,'Parent',hCon);
set(hCon,'Tag','ConGrphAx',...
'Box','off','TickDir','out',...
'XTick',spm_DesRep('ScanTick',nPar,10) - 0.5,'XTickLabel','',...
'XLim', [0,nPar],...
'YTick',[-1,0,+1],'YTickLabel','',...
'YLim',[min(xCon(xSPM.Ic(ii)).c),max(xCon(xSPM.Ic(ii)).c)] +...
[-1 +1] * max(abs(xCon(xSPM.Ic(ii)).c))/10 )
else
%-F-contrast - image
%--------------------------------------------------------------
h = image((xCon(xSPM.Ic(ii)).c'/max(abs(xCon(xSPM.Ic(ii)).c(:)))+1)*32,...
'Parent',hCon);
set(hCon,'Tag','ConGrphAx',...
'Box','on','TickDir','out',...
'XTick',spm_DesRep('ScanTick',nPar,10),'XTickLabel','',...
'XLim', [0,nPar]+0.5,...
'YTick',[0:size(SPM.xCon(xSPM.Ic(ii)).c,2)]+0.5,...
'YTickLabel','',...
'YLim', [0,size(xCon(xSPM.Ic(ii)).c,2)]+0.5 )
end
ylabel(hCon,num2str(xSPM.Ic(ii)),'FontSize',FS(10),'FontWeight','normal')
set(h,'ButtonDownFcn','spm_DesRep(''SurfCon_CB'')',...
'UserData', struct( 'i', xSPM.Ic(ii),...
'h', htxt,...
'xCon', xCon(xSPM.Ic(ii))))
end
%-Store handles of results section Graphics window objects
%----------------------------------------------------------------------
H = get(Fgraph,'Children');
H = findobj(H,'flat','HandleVisibility','on');
H = findobj(H);
Hv = get(H,'Visible');
set(hResAx,'Tag','PermRes','UserData',struct('H',H,'Hv',{Hv}))
%-Finished results setup
%----------------------------------------------------------------------
varargout = {hReg,xSPM,SPM};
spm('Pointer','Arrow')
%======================================================================
case 'setupgui' %-Set up results section GUI
%======================================================================
% hReg = spm_results_ui('SetupGUI',M,DIM,xSPM,Finter)
if nargin < 5, Finter='Interactive'; else Finter = varargin{5}; end
if nargin < 4, error('Insufficient arguments'), end
M = varargin{2};
DIM = varargin{3};
Finter = spm_figure('GetWin',Finter);
WS = spm('WinScale');
FS = spm('FontSizes');
%-Create frame for Results GUI objects
%------------------------------------------------------------------
hPan = uipanel('Parent',Finter,'Title','','Units','Pixels',...
'Position',[001 001 400 190].*WS,...
'BorderType','Line', 'HighlightColor',[0 0 0],...
'BackgroundColor',spm('Colour'));
hReg = uipanel('Parent',hPan,'Title','','Units','Pixels',...
'BorderType','Etchedin', ...
'Position',[005 005 390 180].*WS,...
'BackgroundColor',[179 179 179]/255);
%-Initialise registry in hReg frame object
%------------------------------------------------------------------
[hReg,xyz] = spm_XYZreg('InitReg',hReg,M,DIM,[0;0;0]);
%-Setup editable XYZ widgets & cross register with registry
%------------------------------------------------------------------
hFxyz = spm_results_ui('DrawXYZgui',M,DIM,varargin{4},xyz,hReg);
spm_XYZreg('XReg',hReg,hFxyz,'spm_results_ui');
%-Set up buttons for results functions
%------------------------------------------------------------------
spm_results_ui('DrawButts',hReg,DIM,Finter,WS,FS);
if spm_check_version('matlab','7.11') ~= 0
drawnow; % required to force "ratio locking"
set(findobj(hPan),'Units','Normalized','FontUnits','Normalized');
end
varargout = {hReg};
%======================================================================
case 'drawbutts' %-Draw results section buttons in Interactive window
%======================================================================
% spm_results_ui('DrawButts',hReg,DIM,Finter,WS,FS)
%
if nargin < 3, error('Insufficient arguments'), end
hReg = varargin{2};
DIM = varargin{3};
if nargin < 4, Finter = spm_figure('FindWin','Interactive');
else Finter = varargin{4}; end
if nargin < 5, WS = spm('WinScale'); else WS = varargin{5}; end
if nargin < 6, FS = spm('FontSizes'); else FS = varargin{6}; end
%-p-values
%------------------------------------------------------------------
hPan = uipanel('Parent',hReg,'Title','p-values','Units','Pixels',...
'Position',[005 085 110 092].*WS,...
'BorderType','Beveledout', ...
'ShadowColor',[0.5 0.5 0.5],...
'FontAngle','Italic',...
'FontSize',FS(10),...
'ForegroundColor',[1 1 1],...
'BackgroundColor',[179 179 179]/255);
uicontrol('Parent',hPan,'Style','PushButton','String','whole brain',...
'Units','Pixels',...
'FontSize',FS(10),...
'ToolTipString',...
'Tabulate summary of local maxima, p-values & statistics',...
'Callback','TabDat = spm_list(''List'',xSPM,hReg);',...
'Interruptible','on','Enable','on',...
'Position',[005 055 100 020].*WS);
uicontrol('Parent',hPan,'Style','PushButton','String','current cluster',...
'Units','Pixels',...
'FontSize',FS(10),...
'ToolTipString',...
'Tabulate p-values & statistics for local maxima of nearest cluster',...
'Callback','TabDat = spm_list(''ListCluster'',xSPM,hReg);',...
'Interruptible','on','Enable','on',...
'Position',[005 030 100 020].*WS);
uicontrol('Parent',hPan,'Style','PushButton','String','small volume',...
'Units','Pixels',...
'FontSize',FS(10),...
'ToolTipString',['Small Volume Correction - corrected p-values ',...
'for a small search region'],...
'Callback','TabDat = spm_VOI(SPM,xSPM,hReg);',...
'Interruptible','on','Enable','on',...
'Position',[005 005 100 020].*WS);
%-SPM area - used for Volume of Interest analyses
%------------------------------------------------------------------
hPan = uipanel('Parent',hReg,'Title','Multivariate','Units','Pixels',...
'Position',[120 085 150 092].*WS,...
'BorderType','Beveledout', ...
'ShadowColor',[0.5 0.5 0.5],...
'FontAngle','Italic',...
'FontSize',FS(10),...
'ForegroundColor',[1 1 1],...
'BackgroundColor',[179 179 179]/255);
uicontrol('Parent',hPan,'Style','PushButton','String','eigenvariate',...
'Position',[005 055 069 020].*WS,...
'ToolTipString',...
'Responses (principal eigenvariate) in volume of interest',...
'Callback','[Y,xY] = spm_regions(xSPM,SPM,hReg)',...
'Interruptible','on','Enable','on',...
'FontSize',FS(10));
uicontrol('Parent',hPan,'Style','PushButton','String','CVA',...
'Position',[076 055 069 020].*WS,...
'ToolTipString',...
'Canonical variates analysis for the current contrast and VOI',...
'Callback','CVA = spm_cva_ui('''',xSPM,SPM)',...
'Interruptible','on','Enable','on',...
'FontSize',FS(10));
uicontrol('Parent',hPan,'Style','PushButton','String','multivariate Bayes',...
'Position',[005 030 140 020].*WS,...
'ToolTipString',...
'Multivariate Bayes',...
'Callback','[MVB] = spm_mvb_ui(xSPM,SPM)',...
'Interruptible','on','Enable','on',...
'FontSize',FS(10));
uicontrol('Parent',hPan,'Style','PushButton','String','BMS',...
'Position',[005 005 069 020].*WS,...
'ToolTipString',...
'Compare or review a multivariate Bayesian model',...
'Callback','[F,P] = spm_mvb_bmc',...
'Interruptible','on','Enable','on',...
'FontSize',FS(8),'ForegroundColor',[1 1 1]/3);
uicontrol('Parent',hPan,'Style','PushButton','String','p-value',...
'Position',[076 005 069 020].*WS,...
'ToolTipString',...
'Randomisation testing of a multivariate Bayesian model',...
'Callback','spm_mvb_p',...
'Interruptible','on','Enable','on',...
'FontSize',FS(8),'ForegroundColor',[1 1 1]/3);
%-Hemodynamic modelling
%------------------------------------------------------------------
if strcmp(spm('CheckModality'),'FMRI')
uicontrol('Parent',hReg,'Style','PushButton','String','Hemodynamics',...
'FontSize',FS(10),...
'ToolTipString','Hemodynamic modelling of regional response',...
'Callback','[Ep,Cp,K1,K2] = spm_hdm_ui(xSPM,SPM,hReg);',...
'Interruptible','on','Enable','on',...
'Position',[125 050 140 020].*WS,...
'ForegroundColor',[1 1 1]/3);
end
%-Not currently used
%------------------------------------------------------------------
%uicontrol('Parent',hReg,'Style','PushButton','String','',...
% 'FontSize',FS(10),...
% 'ToolTipString','',...
% 'Callback','',...
% 'Interruptible','on','Enable','on',...
% 'Position',[010 050 100 020].*WS);
%-Visualisation
%------------------------------------------------------------------
hPan = uipanel('Parent',hReg,'Title','Display','Units','Pixels',...
'Position',[275 085 110 092].*WS,...
'BorderType','Beveledout',...
'ShadowColor',[0.5 0.5 0.5],...
'FontAngle','Italic',...
'FontSize',FS(10),...
'ForegroundColor',[1 1 1],...
'BackgroundColor',[179 179 179]/255);
uicontrol('Parent',hPan,'Style','PushButton','String','plot',...
'FontSize',FS(10),...
'ToolTipString','plot data & contrasts at current voxel',...
'Callback','[Y,y,beta,Bcov] = spm_graph_ui(xSPM,SPM,hReg);',...
'Interruptible','on','Enable','on',...
'Position',[005 055 100 020].*WS,...
'Tag','plotButton');
str = { 'overlays...','slices','sections','montage','render','previous sections','previous render'};
tstr = { 'overlay filtered SPM on another image: ',...
'3 slices / ','slice overlay /','ortho sections / ','render /','previous ortho sections /','previous surface rendering'};
tmp = { 'spm_transverse(''set'',xSPM,hReg)',...
'spm_sections(xSPM,hReg)',...
{@myslover},...
['spm_render( struct( ''XYZ'', xSPM.XYZ,',...
'''t'', xSPM.Z'',',...
'''mat'', xSPM.M,',...
'''dim'', xSPM.DIM))'],...
['global prevsect;','spm_sections(xSPM,hReg,prevsect)'],...
['global prevrend;','if ~isstruct(prevrend)',...
'prevrend = struct(''rendfile'','''',''brt'',[],''col'',[]); end;',...
'spm_render( struct( ''XYZ'', xSPM.XYZ,',...
'''t'', xSPM.Z'',',...
'''mat'', xSPM.M,',...
'''dim'', xSPM.DIM),prevrend.brt,prevrend.rendfile)']};
uicontrol('Parent',hPan,'Style','popupmenu','String',str,...
'FontSize',FS(10),...
'ToolTipString',cat(2,tstr{:}),...
'Callback','spm(''PopUpCB'',gcbo)',...
'UserData',tmp,...
'Interruptible','on','Enable','on',...
'Position',[005 030 100 020].*WS);
str = {'save...',...
'thresholded SPM',...
'all clusters (binary)',...
'all clusters (n-ary)',...
'current cluster'};
tmp = {{@mysavespm, 'thresh' },...
{@mysavespm, 'binary' },...
{@mysavespm, 'n-ary' },...
{@mysavespm, 'current'}};
uicontrol('Parent',hPan,'Style','popupmenu','String',str,...
'FontSize',FS(10),...
'ToolTipString','Save as image',...
'Callback','spm(''PopUpCB'',gcbo)',...
'UserData',tmp,...
'Interruptible','on','Enable','on',...
'Position',[005 005 100 020].*WS);
%-ResultsUI controls
%------------------------------------------------------------------
uicontrol('Parent',hReg,'Style','PushButton','String','clear',...
'ToolTipString','Clear results subpane',...
'FontSize',FS(9),'ForegroundColor','b',...
'Callback',['spm_results_ui(''Clear''); ',...
'spm_input(''!DeleteInputObj''),',...
'spm_clf(''Satellite'')'],...
'Interruptible','on','Enable','on',...
'DeleteFcn','spm_clf(''Graphics'')',...
'Position',[280 050 048 020].*WS);
uicontrol('Parent',hReg,'Style','PushButton','String','exit',...
'ToolTipString','Exit the results section',...
'FontSize',FS(9),'ForegroundColor','r',...
'Callback','spm_results_ui(''close'')',...
'Interruptible','on','Enable','on',...
'Position',[332 050 048 020].*WS);
%======================================================================
case 'setupconmenu' %-Setup Contrast Menu
%======================================================================
% spm_results_ui('SetupConMenu',xSPM,SPM,Finter)
if nargin < 4, Finter = 'Interactive'; else Finter = varargin{4}; end
if nargin < 3, error('Insufficient arguments'), end
xSPM = varargin{2};
SPM = varargin{3};
Finter = spm_figure('GetWin',Finter);
hC = uimenu(Finter,'Label','Contrasts', 'Tag','ContrastsUI');
hC1 = uimenu(hC,'Label','New Contrast...',...
'UserData',struct('Ic',0),...
'Callback',{@mychgcon,xSPM});
hC1 = uimenu(hC,'Label','Change Contrast');
for i=1:numel(SPM.xCon)
hC2 = uimenu(hC1,'Label',[SPM.xCon(i).STAT, ': ', SPM.xCon(i).name], ...
'UserData',struct('Ic',i),...
'Callback',{@mychgcon,xSPM});
if any(xSPM.Ic == i)
set(hC2,'ForegroundColor',[0 0 1],'Checked','on');
end
end
hC1 = uimenu(hC,'Label','Previous Contrast',...
'Accelerator','P',...
'UserData',struct('Ic',xSPM.Ic-1),...
'Callback',{@mychgcon,xSPM});
if xSPM.Ic-1<1, set(hC1,'Enable','off'); end
hC1 = uimenu(hC,'Label','Next Contrast',...
'Accelerator','N',...
'UserData',struct('Ic',xSPM.Ic+1),...
'Callback',{@mychgcon,xSPM});
if xSPM.Ic+1>numel(SPM.xCon), set(hC1,'Enable','off'); end
hC1 = uimenu(hC,'Label','Significance level','Separator','on');
xSPMtmp = xSPM; xSPMtmp.thresDesc = '';
uimenu(hC1,'Label','Change...','UserData',struct('Ic',xSPM.Ic),...
'Callback',{@mychgcon,xSPMtmp});
if strcmp(xSPM.STAT,'P')
xSPMtmp = xSPM; xSPMtmp.thresDesc = 'LogBF';
uimenu(hC1,'Label','Set LogBF','UserData',struct('Ic',xSPM.Ic),...
'Callback',{@mychgcon,xSPMtmp});
else
xSPMtmp = xSPM; xSPMtmp.thresDesc = 'p<0.05 (FWE)';
uimenu(hC1,'Label','Set to 0.05 (FWE)','UserData',struct('Ic',xSPM.Ic),...
'Callback',{@mychgcon,xSPMtmp});
xSPMtmp = xSPM; xSPMtmp.thresDesc = 'p<0.001 (unc.)';
uimenu(hC1,'Label','Set to 0.001 (unc.)','UserData',struct('Ic',xSPM.Ic),...
'Callback',{@mychgcon,xSPMtmp});
end
uimenu(hC1,'Label',[xSPM.thresDesc ', k=' num2str(xSPM.k)],...
'Enable','off','Separator','on');
hC1 = uimenu(hC,'Label','Multiple display...',...
'Separator','on',...
'Callback',{@mycheckres,xSPM});
varargout = {hC};
%======================================================================
case 'setupatlasmenu' %-Setup Atlas Menu
%======================================================================
% spm_results_ui('SetupAtlasMenu',Finter)
Finter = varargin{2};
%hC = uicontextmenu;
hC = uimenu(Finter,'Label','Atlas', 'Tag','AtlasUI');
hC1 = uimenu(hC,'Label','Label using');
list = spm_atlas('List','installed');
for i=1:numel(list)
uimenu(hC1,'Label',list(i).name,...
'Callback',sprintf('spm_list(''label'',''%s'');',list(i).name));
end
if isempty(list), set(hC1,'Enable','off'); end
%hC2 = uimenu(hC,'Label','Download Atlas...',...
% 'Separator','on',...
% 'Callback','spm_atlas(''install'');');
varargout = {hC};
%======================================================================
case 'drawxyzgui' %-Draw XYZ GUI area
%======================================================================
% hFxyz = spm_results_ui('DrawXYZgui',M,DIM,xSPM,xyz,hReg)
if nargin<6, hReg=spm_XYZreg('FindReg','Interactive');
else hReg=varargin{6}; end
if nargin < 5, xyz=[0;0;0]; else xyz=varargin{5}; end
if nargin < 4, error('Insufficient arguments'), end
DIM = varargin{3};
M = varargin{2};
xyz = spm_XYZreg('RoundCoords',xyz,M,DIM);
%-Font details
%------------------------------------------------------------------
WS = spm('WinScale');
FS = spm('FontSizes');
PF = spm_platform('fonts');
%-Create XYZ control objects
%------------------------------------------------------------------
hFxyz = uipanel('Parent',hReg,'Title','co-ordinates','Units','Pixels',...
'Position',[005 005 265 040].*WS,...
'BorderType','Beveledout',...
'ShadowColor',[0.5 0.5 0.5],...
'FontAngle','Italic',...
'FontSize',FS(10),...
'ForegroundColor',[1 1 1],...
'BackgroundColor',[179 179 179]/255);
uicontrol('Parent',hReg,'Style','Text','String','x =',...
'Position',[015 010 024 018].*WS,...
'FontName',PF.times,'FontSize',FS(10),'FontAngle','Italic',...
'HorizontalAlignment','Center');
hX = uicontrol('Parent',hReg,'Style','Edit','String',sprintf('%.2f',xyz(1)),...
'ToolTipString','enter x-coordinate',...
'Position',[039 010 056 020].*WS,...
'FontSize',FS(10),'BackGroundColor',[.8,.8,1],...
'HorizontalAlignment','Right',...
'Tag','hX',...
'Callback','spm_results_ui(''EdWidCB'')');
uicontrol('Parent',hReg,'Style','Text','String','y =',...
'Position',[100 010 024 018].*WS,...
'FontName',PF.times,'FontSize',FS(10),'FontAngle','Italic',...
'HorizontalAlignment','Center');
hY = uicontrol('Parent',hReg,'Style','Edit','String',sprintf('%.2f',xyz(2)),...
'ToolTipString','enter y-coordinate',...
'Position',[124 010 056 020].*WS,...
'FontSize',FS(10),'BackGroundColor',[.8,.8,1],...
'HorizontalAlignment','Right',...
'Tag','hY',...
'Callback','spm_results_ui(''EdWidCB'')');
if DIM(3) ~= 1
uicontrol('Parent',hReg,'Style','Text','String','z =',...
'Position',[185 010 024 018].*WS,...
'FontName',PF.times,'FontSize',FS(10),'FontAngle','Italic',...
'HorizontalAlignment','Center');
hZ = uicontrol('Parent',hReg,'Style','Edit','String',sprintf('%.2f',xyz(3)),...
'ToolTipString','enter z-coordinate',...
'Position',[209 010 056 020].*WS,...
'FontSize',FS(10),'BackGroundColor',[.8,.8,1],...
'HorizontalAlignment','Right',...
'Tag','hZ',...
'Callback','spm_results_ui(''EdWidCB'')');
else
hZ = [];
end
%-Statistic value reporting pane
%------------------------------------------------------------------
hPan = uipanel('Parent',hReg,'Title','statistic','Units','Pixels',...
'Position',[275 005 110 040].*WS,...
'BorderType','Beveledout', ...
'ShadowColor',[0.5 0.5 0.5],...
'FontAngle','Italic',...
'FontSize',FS(10),...
'ForegroundColor',[1 1 1],...
'BackgroundColor',[179 179 179]/255);
hSPM = uicontrol('Parent',hPan,'Style','Text','String','',...
'Position',[005 001 100 020].*WS,...
'FontSize',FS(10),...
'HorizontalAlignment','Center');
%-Store data
%------------------------------------------------------------------
set(hFxyz,'Tag','hFxyz','UserData',struct(...
'hReg', [],...
'M', M,...
'DIM', DIM,...
'XYZ', varargin{4}.XYZmm,...
'Z', varargin{4}.Z,...
'hX', hX,...
'hY', hY,...
'hZ', hZ,...
'hSPM', hSPM,...
'xyz', xyz ));
set([hX,hY,hZ],'UserData',hFxyz)
varargout = {hFxyz};
%======================================================================
case 'edwidcb' %-Callback for editable widgets
%======================================================================
% spm_results_ui('EdWidCB')
hC = gcbo;
d = find(strcmp(get(hC,'Tag'),{'hX','hY','hZ'}));
hFxyz = get(hC,'UserData');
UD = get(hFxyz,'UserData');
xyz = UD.xyz;
nxyz = xyz;
o = evalin('base',['[',get(hC,'String'),']'],'sprintf(''error'')');
if ischar(o) || length(o)>1
warning(sprintf('%s: Error evaluating ordinate:\n\t%s',...
mfilename,lasterr))
else
nxyz(d) = o;
nxyz = spm_XYZreg('RoundCoords',nxyz,UD.M,UD.DIM);
end
if abs(xyz(d)-nxyz(d))>0
UD.xyz = nxyz; set(hFxyz,'UserData',UD)
if ~isempty(UD.hReg), spm_XYZreg('SetCoords',nxyz,UD.hReg,hFxyz); end
set(hC,'String',sprintf('%.3f',nxyz(d)))
spm_results_ui('UpdateSPMval',UD)
end
%======================================================================
case 'updatespmval' %-Update SPM value in GUI
%======================================================================
% spm_results_ui('UpdateSPMval',hFxyz)
% spm_results_ui('UpdateSPMval',UD)
if nargin<2, error('insufficient arguments'), end
if isstruct(varargin{2}), UD=varargin{2}; else UD = get(varargin{2},'UserData'); end
i = spm_XYZreg('FindXYZ',UD.xyz,UD.XYZ);
if isempty(i), str = ''; else str = sprintf('%6.2f',UD.Z(i)); end
set(UD.hSPM,'String',str);
%======================================================================
case 'getcoords' % Get current co-ordinates from XYZ widget
%======================================================================
% xyz = spm_results_ui('GetCoords',hFxyz)
if nargin<2, hFxyz='Interactive'; else hFxyz=varargin{2}; end
hFxyz = spm_results_ui('FindXYZframe',hFxyz);
varargout = {getfield(get(hFxyz,'UserData'),'xyz')};
%======================================================================
case 'setcoords' % Set co-ordinates to XYZ widget
%======================================================================