SBGN Validation Webservice

A SparkJava-based simple deployable REST API to validate SBGNML files.

Test Request

curl -X POST --data "xml=$(cat src/main/resources/example.sbgn)" http://localhost:4567/validateString
curl -X POST http://localhost:4567/test

Install

Install libsbgn jar to local Maven repository

mvn install:install-file -Dfile=PATH/lib/org.sbgn-with-dependencies.jar -DgroupId=org.sbgn -DartifactId=org.sbgn-with-dependencies -Dversion=0.3 -Dpackaging=jar

Compile/Build with Maven

mvn clean install

Build Jar with Dependencies

// mvn assembly:single // NOT WORKING 
mvn clean package assembly:single

Run webservice

java -jar /code/target/sbgn-validator-webservice-0.1-jar-with-dependencies.jar 

Docker

Build

docker build -t cannin/sbgn-validator-webservice .

Run

docker run --name sbgn-valid -p 9000:4567 -t cannin/sbgn-validator-webservice 
docker run --name sbgn-valid -i -p 9000:4567 -t cannin/sbgn-validator-webservice bash