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@carbonelab

Carbone Lab

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  1. RRBS_PE_Snakemake RRBS_PE_Snakemake Public

    R 2

  2. RNAseq_Snakemake RNAseq_Snakemake Public

    R 1 1

  3. axtToSyn axtToSyn Public

    Detect synteny blocks and synteny breakpoints from pairwise genome alignment file

    Python

  4. hicpileup hicpileup Public

    hicpileup generates HIC pileups around a BED file features

    Python

  5. lastz-pipeline lastz-pipeline Public

    Pairwise genome alignment pipeline

    R

  6. hic_workflow hic_workflow Public

    Snakemake workflow for processing Arima HIC data

    Python

Repositories

Showing 7 of 7 repositories
  • pileup-insulation Public

    Pileup the HIC insulation for a set of features.

    carbonelab/pileup-insulation’s past year of commit activity
    R 0 MIT 0 0 0 Updated Sep 7, 2023
  • hicpileup Public

    hicpileup generates HIC pileups around a BED file features

    carbonelab/hicpileup’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 4, 2023
  • hic_workflow Public

    Snakemake workflow for processing Arima HIC data

    carbonelab/hic_workflow’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 4, 2023
  • axtToSyn Public

    Detect synteny blocks and synteny breakpoints from pairwise genome alignment file

    carbonelab/axtToSyn’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 4, 2023
  • lastz-pipeline Public

    Pairwise genome alignment pipeline

    carbonelab/lastz-pipeline’s past year of commit activity
    R 0 MIT 0 0 0 Updated Sep 4, 2023
  • RNAseq_Snakemake Public
    carbonelab/RNAseq_Snakemake’s past year of commit activity
    R 1 1 0 0 Updated Jun 13, 2023
  • RRBS_PE_Snakemake Public
    carbonelab/RRBS_PE_Snakemake’s past year of commit activity
    R 2 0 0 0 Updated May 31, 2023

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