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cas-bioinf/Scoe_SigE_ChIP-seq

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data

data

 
 

new_motif_site

new_motif_site

 
 

peak_summit_motif_discovery

peak_summit_motif_discovery

 
 

LICENSE

LICENSE

 
 

enviromenment_expicit.txt

enviromenment_expicit.txt

 
 

meme_txt_parser.py

meme_txt_parser.py

 
 

new_motif_second_part.html

new_motif_second_part.html

 
 

new_motif_second_part.ipynb

new_motif_second_part.ipynb

 
 

readme.md

readme.md

 
 

run_all.sh

run_all.sh

 
 

sigE_discovery_peak_summits.html

sigE_discovery_peak_summits.html

 
 

sigE_discovery_peak_summits.ipynb

sigE_discovery_peak_summits.ipynb

 
 

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DOI

This is source code containing analysis of SigE ChIP-seq regions for SigE motifs in Streptomyces coelicolor

To rerun the analysis

  • please replicate the conda environment based on environment_explicit.txt
  • activate the environment
  • in the root of the downloaded directory (this one), run the run_all.sh

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Code for Streptomyces coelicolor SigE ChIP-seq motif analysis

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publication release Latest
Dec 11, 2023
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