fix pip install for nrao systems

casangi · Apr 15, 2021 · 158c462 · 158c462
1 parent bc539c8
commit 158c462
Showing 1 changed file with 63 additions and 22 deletions.
diff --git a/docs/introduction.ipynb b/docs/introduction.ipynb
@@ -216,21 +216,65 @@
     {
       "cell_type": "markdown",
       "metadata": {
-        "id": "sIh6Ek43-l_q"
+        "id": "9E6UavO68vf3"
       },
       "source": [
         "### Pip Installation\n",
         "\n",
         "```sh\n",
-        "python3 -m venv cngi\n",
-        "source cngi/bin/activate\n",
-        "#(maybe) sudo apt-get install libgfortran3\n",
-        "pip install --upgrade pip\n",
-        "pip install --index-url https://casa-pip.nrao.edu:443/repository/pypi-group/simple casatasks==6.2.0.106\n",
-        "pip install --index-url https://casa-pip.nrao.edu:443/repository/pypi-group/simple casadata\n",
-        "pip install cngi-prototype\n",
+        "bash$: python3 -m venv cngi\n",
+        "bash$: source cngi/bin/activate\n",
+        "(cngi) bash$: pip install --upgrade pip wheel\n",
+        "(cngi) bash$: pip install cngi-prototype\n",
         "```\n",
-        "\n"
+        "\n",
+        "Sanity Check\n",
+        "\n",
+        "```\n",
+        "(cngi) bash$: gdown --id 1ui6KxXivE0SRFW8na_ry1Blw-Zk5YDDH\n",
+        "(cngi) bash$: tar -xf M100.vis.zarr.tar\n",
+        "(cngi) bash$: python\n",
+        "\n",
+        ">>> from cngi.dio import read_vis\n",
+        ">>>\n",
+        ">>> mxds = read_vis('M100.vis.zarr')\n",
+        ">>>\n",
+        ">>> print(mxds)\n",
+        ">>> print(mxds.xds0)\n",
+        "```"
+      ]
+    },
+    {
+      "cell_type": "markdown",
+      "metadata": {
+        "id": "sIh6Ek43-l_q"
+      },
+      "source": [
+        "### Pip Installation - Full CASA6 + CNGI\n",
+        "\n",
+        "```sh\n",
+        "bash$: python3 -m venv cngi\n",
+        "bash$: source cngi/bin/activate\n",
+        "# [ubuntu only] sudo apt-get install libgfortran3\n",
+        "(cngi) bash$: pip install --upgrade pip wheel\n",
+        "(cngi) bash$: pip install --index-url https://casa-pip.nrao.edu:443/repository/pypi-group/simple casatools==6.2.0.106\n",
+        "(cngi) bash$: pip install --index-url https://casa-pip.nrao.edu:443/repository/pypi-group/simple casadata\n",
+        "(cngi) bash$: pip install cngi-prototype\n",
+        "```\n",
+        "\n",
+        "Sanity check\n",
+        "\n",
+        "```\n",
+        "(cngi) bash$: gdown --id 15HfB4rJKqEH7df088Ge5YLrCTXBIax6R\n",
+        "(cngi) bash$: tar -xf M100.ms.tar\n",
+        "(cngi) bash$: python\n",
+        "\n",
+        ">>> from cngi.conversion import convert_ms\n",
+        ">>> \n",
+        ">>> mxds = convert_ms('M100.ms')\n",
+        ">>> print(mxds)\n",
+        ">>> print(mxds.xds0)\n",
+        "```"
       ]
     },
     {
@@ -242,12 +286,9 @@
         "### Conda Installation\n",
         "\n",
         "```sh\n",
-        "conda create -n cngi python=3.6\n",
-        "conda activate cngi\n",
-        "#(maybe) sudo apt-get install libgfortran3\n",
-        "pip install --index-url https://casa-pip.nrao.edu:443/repository/pypi-group/simple casatasks==6.2.0.106\n",
-        "pip install --index-url https://casa-pip.nrao.edu:443/repository/pypi-group/simple casadata\n",
-        "pip install cngi-prototype\n",
+        "bash$: conda create -n cngi python=3.6\n",
+        "bash$: conda activate cngi\n",
+        "bash$: pip install cngi-prototype\n",
         "```\n",
         "\n"
       ]
@@ -261,13 +302,13 @@
         "### Installation from Source\n",
         "\n",
         "```sh\n",
-        "git clone https://github.com/casangi/cngi_prototype.git\n",
-        "cd cngi_prototype\n",
-        "python3 -m venv venv\n",
-        "source venv/bin/activate\n",
-        "pip install wheel\n",
-        "pip install -r requirements.txt\n",
-        "python setup.py install --root=.\n",
+        "bash$: git clone https://github.com/casangi/cngi_prototype.git\n",
+        "bash$: cd cngi_prototype\n",
+        "bash$: python3 -m venv venv\n",
+        "bash$: source venv/bin/activate\n",
+        "bash$: pip install --upgrade pip wheel\n",
+        "bash$: pip install -r requirements.txt\n",
+        "bash$: python setup.py install --root=.\n",
         "```\n",
         "\n"
       ]