A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence
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T-Coffee is a collection of tools for Computing, Evaluating and Manipulating Multiple Alignments of DNA, RNA, Protein Sequences and Structures.


T-Coffee compilation requires the following tools installed on your system make, gcc-c++, g77, Perl and CPAN.


Clone the git repository on your computer with the following command:

git clone git@github.com:cbcrg/tcoffee.git tcoffee

Make sure you have installed the required dependencies listed above. When done, move in the project root folder named tcoffee and enter the following commands:

$ cd compile
$ make t_coffee

The binary will be automatically copied to the path specified by the environment variable $USER_BIN (check that it exists before run the make command).