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README.md

T-Coffee

T-Coffee is a collection of tools for Computing, Evaluating and Manipulating Multiple Alignments of DNA, RNA, Protein Sequences and Structures.

Prerequisites

T-Coffee compilation requires the following tools installed on your system make, gcc-c++, g77, Perl, sphinx, CPAN.

Compile

Note that the git repository is meant to support the packaging of new releases. If you simply want to install T-Coffee on your system please download the latest distribution from http://www.tcoffee.org/Projects/tcoffee/index.html#DOWNLOAD

All required installation documentation is available from http://www.tcoffee.org/Projects/tcoffee/documentation/index.html#t-coffee-installation

If you nontheless want to compile from git:

Clone the git repository on your computer with the following command: 
	git clone git@github.com:cbcrg/tcoffee.git tcoffee
make sure you have installed all dependencies
cd tcoffee/t_coffee/src
make t_coffee
mv t_coffee <bin location> OR add current dir to your path - not recommended

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A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence

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