This repository has been archived by the owner on Jan 18, 2020. It is now read-only.
Merge the latest internal bug fixes and features #10
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Since the genotype field is nullable there is no guarantee that it will be present in call cases so we need to check for its existence before attempting to access properties of it. From internal change on 11/21
From internal change on 11/22
From internal merge on 12/2
From internal merge on 12/2
From internal changes on 12/4
From internal merge on 12/4
From internal merge on 12/6
Fix load_hpo method to take the using argument. From internal change on 12/6
From internal change on 12/6
This key is not always there and was causing key errors in the tests. Now, the code properly ignores the effects for variants without this key by checking if the 'EFF' key exists before trying to access and process it. From internal change on 12/6
Without this enabled, files will be queued up to be processed every time they are scanned. From internal change on 12/9
From internal merge on 12/9
…mpty From internal merge on 12/10
From internal merge on 12/10
From internal change on 12/10
This prevent stopping the queue process for faulty samples From internal change on 12/10
Harvest doesn't so neither will we for now
naegelyd
added a commit
that referenced
this pull request
Dec 12, 2013
Merge the latest internal bug fixes and features
Sign up for free
to subscribe to this conversation on GitHub.
Already have an account?
Sign in.
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
No description provided.