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Simplify Gistic Import #29

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selkamand opened this issue Jan 20, 2023 · 0 comments · Fixed by #33
Closed

Simplify Gistic Import #29

selkamand opened this issue Jan 20, 2023 · 0 comments · Fixed by #33

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@selkamand
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Create another shiny server that takes gistic output zips and creates a CRUX gistic object (Rds of maftools::readGistic)

Then a single file import can be used. Will mean we lose the option of viewing 'deep/shallow/all' peaks but could build presets for all versions for TCGA/PCAWG and make automatically available
@selkamand selkamand changed the title New gistic file input involves import of 4 files Simplify Gistic Import Jan 20, 2023
@selkamand selkamand linked a pull request Jan 23, 2023 that will close this issue
29 simplify gistic import #33
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29 simplify gistic import CCICB/CRUX
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@selkamand