group-handbook-template

This is a work-in-progress, but will eventually be a template repo that contains a skeleton of a lab group handbook (much like the one described by Tendler et al., 2023).

Inspiration

• Zipkin lab policies: https://github.com/zipkinlab/Policies/tree/master

• Bahlai lab policies: https://github.com/BahlaiLab/Policies

Things to edit

I'll turn this into instructions later, but here's a running list of things you'll need to edit after using this template:

• Everything in _variables.yml

• author: in _quarto.yml (can't do lists with shortcodes)

• cover.png and cover-image in _quarto.yml if you want a lab logo.

• repo_url in _quarto.yml

• Red callout boxes titled "Group Edit" hold suggestions for what content to include on that page/section. These should be deleted or commented out once the edits happen.

To publish

You only have to do this once.

Run quarto publish gh-pages in the terminal to create _publish.yml. Commit and push _publish.yml and from then on the book should automatically re-render when changes are pushed to the GitHub repo.