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Trouble installing gpuR package with R 3.6 #152

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monsieurxu opened this issue Apr 29, 2019 · 4 comments
Closed

Trouble installing gpuR package with R 3.6 #152

monsieurxu opened this issue Apr 29, 2019 · 4 comments
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@monsieurxu
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monsieurxu commented Apr 29, 2019

Hello, as i upgraded to R 3.6.0 i try to reinstall gpuR package. It fails on 2 PC, one under macOS 10.14 and the other one under Windows10.

So I tryed installing with
devtools::install_github("cdeterman/gpuR")

But same error each time:

clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o gpuR.so RcppExports.o chol.o context.o custom_math.o device.o gpuEigenPtr.o gpuMatrix_igemm.o norm.o platform.o set_row_order.o solve.o synchronize.o trunc_gpuMat.o utils-vcl.o utils.o vclPtr.o vienna_blas1.o vienna_blas2.o vienna_blas3.o vienna_eigen.o vienna_qr.o vienna_stats.o vienna_svd.o -framework OpenCL -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/3.6/Resources/library/00LOCK-gpuR/00new/gpuR/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for ‘eigen’ from package ‘base’ in package ‘gpuR’
Creating a generic function for ‘%o%’ from package ‘base’ in package ‘gpuR’
Creating a generic function for ‘tcrossprod’ from package ‘base’ in package ‘gpuR’
Creating a generic function for ‘nrow’ from package ‘base’ in package ‘gpuR’
Creating a generic function for ‘ncol’ from package ‘base’ in package ‘gpuR’
Creating a generic function for ‘crossprod’ from package ‘base’ in package ‘gpuR’
Creating a generic function for ‘cov’ from package ‘stats’ in package ‘gpuR’
Creating a generic function for ‘colSums’ from package ‘base’ in package ‘gpuR’
Error in match.call(definition, call, expand.dots, envir) :
unused arguments (na.rm = c("missing", ""), dims = c("missing", ""))
Error: unable to load R code in package ‘gpuR’
Execution halted
ERROR: lazy loading failed for package ‘gpuR’
* removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/gpuR’
Error in i.p(...) :
(converted from warning) installation of package ‘/var/folders/dy/16z3gx5d3lldr_05kj18xt540000gp/T//Rtmpsj04nE/file133567dc6d1c/gpuR_2.0.3.tar.gz’ had non-zero exit status

@cdeterman
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@monsieurxu thanks for the report, I am actively working on this. I will update when I have the solution resolved for release to CRAN.

@cdeterman
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@monsieurxu feel free to try to install from the develop branch in this repo.

@monsieurxu
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ok, it seems to be fixed. Thank you

@cdeterman
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@monsieurxu excellent, gives me more confidence submitting the fix to CRAN. Thank you

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