Added missing @cdk.githash tags

Change-Id: Icc7fbc9e989cea067059d51f70c59b73b9664d5f Signed-off-by: John May <john.wilkinsonmay@gmail.com>
cdk · May 7, 2013 · c31d6b9 · c31d6b9
1 parent 8287030
commit c31d6b9
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Showing 60 changed files with 68 additions and 15 deletions.
diff --git a/src/main/org/openscience/cdk/CDK.java b/src/main/org/openscience/cdk/CDK.java
@@ -34,6 +34,7 @@
  * Helper class to provide general information about this CDK library.
  *
  * @cdk.module core
+ * @cdk.githash
  */
 @TestClass("org.openscience.cdk.CDKTest")
 public class CDK {

diff --git a/src/main/org/openscience/cdk/ReactionScheme.java b/src/main/org/openscience/cdk/ReactionScheme.java
@@ -43,6 +43,7 @@
  * @author      miguelrojasch <miguelrojasch@yahoo.es>
  * @cdk.module  data
  * @cdk.keyword reaction
+ * @cdk.githash
  */
 public class ReactionScheme extends ReactionSet implements IReactionScheme{
 

diff --git a/src/main/org/openscience/cdk/atomtype/mapper/AtomTypeMapper.java b/src/main/org/openscience/cdk/atomtype/mapper/AtomTypeMapper.java
@@ -35,6 +35,7 @@
  * algorithm and write the resulting atom types using the Sybyl atom type scheme.
  * 
  * @cdk.module atomtype
+ * @cdk.githash
  */
 @TestClass("org.openscience.cdk.atomtype.mapper.AtomTypeMapperTest")
 public class AtomTypeMapper {

diff --git a/src/main/org/openscience/cdk/charges/Electronegativity.java b/src/main/org/openscience/cdk/charges/Electronegativity.java
@@ -33,6 +33,7 @@
  * @cdk.created    2008-104-31
  * @cdk.module  charges
  * @cdk.keyword electronegativity
+ * @cdk.githash
  */
 @TestClass("org.openscience.cdk.charges.ElectronegativityTest")
 public class Electronegativity {

diff --git a/src/main/org/openscience/cdk/charges/PiElectronegativity.java b/src/main/org/openscience/cdk/charges/PiElectronegativity.java
@@ -35,6 +35,7 @@
  * @cdk.created  2008-104-31
  * @cdk.module   charges
  * @cdk.keyword  electronegativity
+ * @cdk.githash
  */
 @TestClass("org.openscience.cdk.charges.PiElectronegativityTest")
 public class PiElectronegativity {

diff --git a/src/main/org/openscience/cdk/charges/StabilizationCharges.java b/src/main/org/openscience/cdk/charges/StabilizationCharges.java
@@ -46,6 +46,7 @@
  * @cdk.created  2008-104-31
  * @cdk.module   charges
  * @cdk.keyword  stabilization charge
+ * @cdk.githash
  */
 @TestClass("org.openscience.cdk.charges.StabilizationChargesTest")
 public class StabilizationCharges {

diff --git a/src/main/org/openscience/cdk/fingerprint/LingoFingerprinter.java b/src/main/org/openscience/cdk/fingerprint/LingoFingerprinter.java
@@ -46,6 +46,7 @@
  * @cdk.module smiles
  * @cdk.keyword fingerprint
  * @cdk.keyword hologram
+ * @cdk.githash
  */
 @TestClass("org.openscience.cdk.fingerprint.LingoFingerprinterTest")
 public class LingoFingerprinter implements IFingerprinter {

diff --git a/src/main/org/openscience/cdk/formula/AdductFormula.java b/src/main/org/openscience/cdk/formula/AdductFormula.java
@@ -49,6 +49,7 @@
  * @author      miguelrojasch
  * @cdk.created 2007-11-20
  * @cdk.keyword molecular formula
+ * @cdk.githash
  */
 @TestClass("org.openscience.cdk.formula.AdductFormulaTest")
 public class AdductFormula implements Iterable<IMolecularFormula>, IAdductFormula, Cloneable{

diff --git a/src/main/org/openscience/cdk/formula/IsotopeContainer.java b/src/main/org/openscience/cdk/formula/IsotopeContainer.java
@@ -13,6 +13,7 @@
  * @author Miguel Rojas Cherto
  * 
  * @cdk.module  formula
+ * @cdk.githash
  */
 @TestClass("org.openscience.cdk.formula.IsotopeContainerTest")
 public class IsotopeContainer{

diff --git a/src/main/org/openscience/cdk/formula/IsotopePattern.java b/src/main/org/openscience/cdk/formula/IsotopePattern.java
@@ -16,6 +16,7 @@
  * @author Miguel Rojas Cherto
  * 
  * @cdk.module formula
+ * @cdk.githash
  */
 @TestClass("org.openscience.cdk.formula.IsotopePatternTest")
 public class IsotopePattern {

diff --git a/src/main/org/openscience/cdk/formula/IsotopePatternManipulator.java b/src/main/org/openscience/cdk/formula/IsotopePatternManipulator.java
@@ -11,6 +11,7 @@
  * @author Miguel Rojas Cherto
  *
  * @cdk.module  formula
+ * @cdk.githash
  */
 @TestClass("org.openscience.cdk.formula.IsotopePatternManipulatorTest")
 public class IsotopePatternManipulator {

diff --git a/src/main/org/openscience/cdk/formula/IsotopePatternSimilarity.java b/src/main/org/openscience/cdk/formula/IsotopePatternSimilarity.java
@@ -11,6 +11,7 @@
  * @author Miguel Rojas Cherto
  * 
  * @cdk.module  formula
+ * @cdk.githash
  */
 @TestClass("org.openscience.cdk.formula.IsotopePatternSimilarityTest")
 public class IsotopePatternSimilarity{

diff --git a/src/main/org/openscience/cdk/formula/MolecularFormula.java b/src/main/org/openscience/cdk/formula/MolecularFormula.java
@@ -50,6 +50,7 @@
  * @author      miguelrojasch
  * @cdk.created 2007-11-20
  * @cdk.keyword molecular formula
+ * @cdk.githash
  */
 @TestClass("org.openscience.cdk.formula.MolecularFormulaTest")
 public class MolecularFormula implements IMolecularFormula {

diff --git a/src/main/org/openscience/cdk/formula/MolecularFormulaChecker.java b/src/main/org/openscience/cdk/formula/MolecularFormulaChecker.java
@@ -45,6 +45,7 @@
  * @author      miguelrojasch
  * @cdk.created 2007-11-20
  * @cdk.keyword molecule, molecular formula
+ * @cdk.githash
  * @see         IRule
  */
 @TestClass("org.openscience.cdk.formula.MolecularFormulaCheckerTest")

diff --git a/src/main/org/openscience/cdk/formula/MolecularFormulaRange.java b/src/main/org/openscience/cdk/formula/MolecularFormulaRange.java
@@ -45,6 +45,7 @@
  * @author      miguelrojasch
  * @cdk.created 2007-11-20
  * @cdk.keyword molecular formula
+ * @cdk.githash
  */
 @TestClass("org.openscience.cdk.formula.MolecularFormulaRangeTest")
 public class MolecularFormulaRange implements Cloneable {

diff --git a/src/main/org/openscience/cdk/formula/MolecularFormulaSet.java b/src/main/org/openscience/cdk/formula/MolecularFormulaSet.java
@@ -39,6 +39,7 @@
  * @author      miguelrojasch
  * @cdk.created 2007-11-20
  * @cdk.keyword molecular formula
+ * @cdk.githash
  */
 @TestClass("org.openscience.cdk.formula.MolecularFormulaSetTest")
 public class MolecularFormulaSet implements Iterable<IMolecularFormula>, IMolecularFormulaSet, Cloneable {

diff --git a/src/main/org/openscience/cdk/formula/rules/ChargeRule.java b/src/main/org/openscience/cdk/formula/rules/ChargeRule.java
@@ -51,6 +51,7 @@
  * @cdk.module  formula
  * @author      miguelrojasch
  * @cdk.created 2007-11-20
+ * @cdk.githash
  */
 public class ChargeRule implements IRule{
 

diff --git a/src/main/org/openscience/cdk/formula/rules/ElementRule.java b/src/main/org/openscience/cdk/formula/rules/ElementRule.java
@@ -59,6 +59,7 @@
  * @cdk.module  formula
  * @author      miguelrojasch
  * @cdk.created 2007-11-20
+ * @cdk.githash
  */
 public class ElementRule implements IRule{
 

diff --git a/src/main/org/openscience/cdk/formula/rules/IRule.java b/src/main/org/openscience/cdk/formula/rules/IRule.java
@@ -31,6 +31,7 @@
  * @cdk.module  formula
  * @author      miguelrojasch
  * @cdk.created 2007-11-20
+ * @cdk.githash
  */
 public interface IRule {
 

diff --git a/src/main/org/openscience/cdk/formula/rules/IsotopePatternRule.java b/src/main/org/openscience/cdk/formula/rules/IsotopePatternRule.java
@@ -57,6 +57,7 @@
  * @cdk.module  formula
  * @author      Miguel Rojas Cherto
  * @cdk.created 2007-11-20
+ * @cdk.githash
  */
 public class IsotopePatternRule implements IRule{
 

diff --git a/src/main/org/openscience/cdk/formula/rules/MMElementRule.java b/src/main/org/openscience/cdk/formula/rules/MMElementRule.java
@@ -63,6 +63,7 @@
  * @cdk.module  formula
  * @author      miguelrojasch
  * @cdk.created 2007-11-20
+ * @cdk.githash
  */
 public class MMElementRule implements IRule{
 

diff --git a/src/main/org/openscience/cdk/formula/rules/NitrogenRule.java b/src/main/org/openscience/cdk/formula/rules/NitrogenRule.java
@@ -53,6 +53,7 @@
  * @cdk.module  formula
  * @author      miguelrojasch
  * @cdk.created 2008-06-11
+ * @cdk.githash
  */
 public class NitrogenRule implements IRule{
 

diff --git a/src/main/org/openscience/cdk/formula/rules/RDBERule.java b/src/main/org/openscience/cdk/formula/rules/RDBERule.java
@@ -65,6 +65,7 @@
  * @cdk.module  formula
  * @author      miguelrojasch
  * @cdk.created 2008-06-11
+ * @cdk.githash
  */
 public class RDBERule implements IRule{
 

diff --git a/src/main/org/openscience/cdk/formula/rules/ToleranceRangeRule.java b/src/main/org/openscience/cdk/formula/rules/ToleranceRangeRule.java
@@ -58,6 +58,7 @@
  * @cdk.module  formula
  * @author      miguelrojasch
  * @cdk.created 2007-11-20
+ * @cdk.githash
  */
 public class ToleranceRangeRule implements IRule{
 

diff --git a/src/main/org/openscience/cdk/graph/invariant/exception/BadMatrixFormatException.java b/src/main/org/openscience/cdk/graph/invariant/exception/BadMatrixFormatException.java
@@ -24,7 +24,9 @@
  */
 package org.openscience.cdk.graph.invariant.exception;
 
-
+/**
+ * @cdk.githash
+ */
 public class BadMatrixFormatException extends Exception {
 
     private static final long serialVersionUID = -4592379323522144603L;

diff --git a/src/main/org/openscience/cdk/graph/invariant/exception/IndexOutOfBoundsException.java b/src/main/org/openscience/cdk/graph/invariant/exception/IndexOutOfBoundsException.java
@@ -24,7 +24,9 @@
  */
 package org.openscience.cdk.graph.invariant.exception;
 
-
+/**
+ * @cdk.githash
+ */
 public class IndexOutOfBoundsException extends Exception {
 
     private static final long serialVersionUID = -1781128244202287777L;

diff --git a/src/main/org/openscience/cdk/graph/invariant/exception/MatrixNotInvertibleException.java b/src/main/org/openscience/cdk/graph/invariant/exception/MatrixNotInvertibleException.java
@@ -24,7 +24,9 @@
  */
 package org.openscience.cdk.graph.invariant.exception;
 
-
+/**
+ * @cdk.githash
+ */
 public class MatrixNotInvertibleException extends Exception {
 
     private static final long serialVersionUID = 8597172558566661068L;

diff --git a/src/main/org/openscience/cdk/io/cml/CustomSerializer.java b/src/main/org/openscience/cdk/io/cml/CustomSerializer.java
@@ -34,6 +34,7 @@
  * 
  * @author     egonw
  * @cdk.module libiocml
+ * @cdk.githash
  */
 public class CustomSerializer extends Serializer {
 

diff --git a/src/main/org/openscience/cdk/iupac/parser/NomParser.jj b/src/main/org/openscience/cdk/iupac/parser/NomParser.jj
@@ -38,6 +38,7 @@ import java.util.*;
  * @author Stephen Tomkinson
  *
  * @cdk.keyword IUPAC name
+ * @cdk.githash
  */
 public class NomParser {
     //private variables needed throughout the program

diff --git a/src/main/org/openscience/cdk/qsar/descriptors/atomic/StabilizationPlusChargeDescriptor.java b/src/main/org/openscience/cdk/qsar/descriptors/atomic/StabilizationPlusChargeDescriptor.java
@@ -61,6 +61,7 @@
  * @cdk.created    2008-104-31
  * @cdk.module     qsaratomic
  * @cdk.set        qsar-descriptors
+ * @cdk.githash
  * @see StabilizationCharges
  */
 @TestClass(value="org.openscience.cdk.qsar.descriptors.atomic.StabilizationPlusChargeDescriptorTest")

diff --git a/src/main/org/openscience/cdk/qsar/descriptors/molecular/FMFDescriptor.java b/src/main/org/openscience/cdk/qsar/descriptors/molecular/FMFDescriptor.java
@@ -50,6 +50,7 @@
  * @cdk.module qsarmolecular
  * @cdk.set qsar-descriptors
  * @cdk.dictref qsar-descriptors:FMF
+ * @cdk.githash
  * @see org.openscience.cdk.fragment.MurckoFragmenter
  */
 @TestClass("org.openscience.cdk.qsar.descriptors.molecular.FMFDescriptorTest")

diff --git a/src/main/org/openscience/cdk/reaction/IReactionMechanism.java b/src/main/org/openscience/cdk/reaction/IReactionMechanism.java
@@ -37,6 +37,7 @@
  *
  * @author      Miguel Rojas
  * @cdk.module  reaction
+ * @cdk.githash
  */
 public interface IReactionMechanism {
 

diff --git a/src/main/org/openscience/cdk/reaction/ReactionChain.java b/src/main/org/openscience/cdk/reaction/ReactionChain.java
@@ -44,6 +44,7 @@
  *
  * @author      miguelrojasch <miguelrojasch@yahoo.es>
  * @cdk.module  extra
+ * @cdk.githash
  */
 @TestClass(value="org.openscience.cdk.reaction.ReactionChainTest")
 public class ReactionChain extends ReactionSet{

diff --git a/src/main/org/openscience/cdk/reaction/ReactionEngine.java b/src/main/org/openscience/cdk/reaction/ReactionEngine.java
@@ -48,7 +48,7 @@
  * @cdk.created    2008-02-01
  * @cdk.module     reaction
  * @cdk.set        reaction-types
- * 
+ * @cdk.githash
  */
 @TestClass("org.openscience.cdk.reaction.ReactionEngineTest")
 public class ReactionEngine{

diff --git a/src/main/org/openscience/cdk/reaction/mechanism/AdductionLPMechanism.java b/src/main/org/openscience/cdk/reaction/mechanism/AdductionLPMechanism.java
@@ -47,7 +47,7 @@
  * @author         miguelrojasch
  * @cdk.created    2008-02-10
  * @cdk.module     reaction
- *
+ * @cdk.githash
  */
 @TestClass(value="org.openscience.cdk.reaction.mechanism.AdductionLPMechanismTest")
 public class AdductionLPMechanism implements IReactionMechanism{

diff --git a/src/main/org/openscience/cdk/reaction/mechanism/AdductionPBMechanism.java b/src/main/org/openscience/cdk/reaction/mechanism/AdductionPBMechanism.java
@@ -47,7 +47,7 @@
  * @author         miguelrojasch
  * @cdk.created    2008-02-10
  * @cdk.module     reaction
- *
+ * @cdk.githash
  */
 @TestClass(value="org.openscience.cdk.reaction.mechanism.AdductionPBMechanismTest")
 public class AdductionPBMechanism implements IReactionMechanism{

diff --git a/src/main/org/openscience/cdk/reaction/mechanism/HeterolyticCleavageMechanism.java b/src/main/org/openscience/cdk/reaction/mechanism/HeterolyticCleavageMechanism.java
@@ -47,7 +47,7 @@
  * @author         miguelrojasch
  * @cdk.created    2008-02-10
  * @cdk.module     reaction
- *
+ * @cdk.githash
  */
 @TestClass(value="org.openscience.cdk.reaction.mechanism.HeterolyticCleavageMechanismTest")
 public class HeterolyticCleavageMechanism implements IReactionMechanism{

diff --git a/src/main/org/openscience/cdk/reaction/mechanism/HomolyticCleavageMechanism.java b/src/main/org/openscience/cdk/reaction/mechanism/HomolyticCleavageMechanism.java
@@ -47,7 +47,7 @@
  * @author         miguelrojasch
  * @cdk.created    2008-02-10
  * @cdk.module     reaction
- *
+ * @cdk.githash
  */
 @TestClass(value="org.openscience.cdk.reaction.mechanism.HomolyticCleavageMechanismTest")
 public class HomolyticCleavageMechanism implements IReactionMechanism{

diff --git a/src/main/org/openscience/cdk/reaction/mechanism/RadicalSiteIonizationMechanism.java b/src/main/org/openscience/cdk/reaction/mechanism/RadicalSiteIonizationMechanism.java
@@ -48,7 +48,7 @@
  * @author         miguelrojasch
  * @cdk.created    2008-02-10
  * @cdk.module     reaction
- *
+ * @cdk.githash
  */
 @TestClass(value="org.openscience.cdk.reaction.mechanism.RadicalSiteIonizationMechanismTest")
 public class RadicalSiteIonizationMechanism implements IReactionMechanism{

diff --git a/src/main/org/openscience/cdk/reaction/mechanism/RadicalSiteRearrangementMechanism.java b/src/main/org/openscience/cdk/reaction/mechanism/RadicalSiteRearrangementMechanism.java
@@ -46,7 +46,7 @@
  * @author         miguelrojasch
  * @cdk.created    2008-02-10
  * @cdk.module     reaction
- *
+ * @cdk.githash
  */
 @TestClass(value="org.openscience.cdk.reaction.mechanism.RadicalSiteRearrangementMechanismTest")
 public class RadicalSiteRearrangementMechanism implements IReactionMechanism{

diff --git a/src/main/org/openscience/cdk/reaction/mechanism/RearrangementChargeMechanism.java b/src/main/org/openscience/cdk/reaction/mechanism/RearrangementChargeMechanism.java
@@ -51,7 +51,7 @@
  * @author         miguelrojasch
  * @cdk.created    2008-02-10
  * @cdk.module     reaction
- *
+ * @cdk.githash
  */
 @TestClass(value="org.openscience.cdk.reaction.mechanism.RearrangementChargeMechanismTest")
 public class RearrangementChargeMechanism implements IReactionMechanism{

diff --git a/src/main/org/openscience/cdk/reaction/mechanism/RemovingSEofBMechanism.java b/src/main/org/openscience/cdk/reaction/mechanism/RemovingSEofBMechanism.java
@@ -48,7 +48,7 @@
  * @author         miguelrojasch
  * @cdk.created    2008-02-10
  * @cdk.module     reaction
- *
+ * @cdk.githash
  */
 @TestClass(value="org.openscience.cdk.reaction.mechanism.RemovingSEofBMechanismTest")
 public class RemovingSEofBMechanism implements IReactionMechanism{

diff --git a/src/main/org/openscience/cdk/reaction/mechanism/RemovingSEofNBMechanism.java b/src/main/org/openscience/cdk/reaction/mechanism/RemovingSEofNBMechanism.java
@@ -47,7 +47,7 @@
  * @author         miguelrojasch
  * @cdk.created    2008-02-10
  * @cdk.module     reaction
- *
+ * @cdk.githash
  */
 @TestClass(value="org.openscience.cdk.reaction.mechanism.RemovingSEofNBMechanismTest")
 public class RemovingSEofNBMechanism implements IReactionMechanism{

diff --git a/src/main/org/openscience/cdk/reaction/mechanism/SharingElectronMechanism.java b/src/main/org/openscience/cdk/reaction/mechanism/SharingElectronMechanism.java
@@ -48,7 +48,7 @@
  * @author         miguelrojasch
  * @cdk.created    2008-02-10
  * @cdk.module     reaction
- *
+ * @cdk.githash
  */
 @TestClass(value="org.openscience.cdk.reaction.mechanism.SharingElectronMechanismTest")
 public class SharingElectronMechanism implements IReactionMechanism{

diff --git a/src/main/org/openscience/cdk/reaction/mechanism/TautomerizationMechanism.java b/src/main/org/openscience/cdk/reaction/mechanism/TautomerizationMechanism.java
@@ -45,7 +45,7 @@
  * @author         miguelrojasch
  * @cdk.created    2008-02-10
  * @cdk.module     reaction
- *
+ * @cdk.githash
  */
 @TestClass(value="org.openscience.cdk.reaction.mechanism.TautomerizationMechanismTest")
 public class TautomerizationMechanism implements IReactionMechanism{

diff --git a/src/main/org/openscience/cdk/reaction/type/AdductionProtonLPReaction.java b/src/main/org/openscience/cdk/reaction/type/AdductionProtonLPReaction.java
@@ -78,6 +78,7 @@
  * @cdk.created    2008-02-11
  * @cdk.module     reaction
  * @cdk.set        reaction-types
+ * @cdk.githash
  * 
  * @see AdductionLPMechanism
  **/

diff --git a/src/main/org/openscience/cdk/reaction/type/AdductionProtonPBReaction.java b/src/main/org/openscience/cdk/reaction/type/AdductionProtonPBReaction.java
@@ -78,6 +78,7 @@
  * @cdk.created    2008-02-11
  * @cdk.module     reaction
  * @cdk.set        reaction-types
+ * @cdk.githash
  * 
  * @see AdductionPBMechanism
  **/