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Cleanup dependencies in CDK tool modules.
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@johnmay @egonw
johnmay authored and egonw committed Dec 22, 2021
1 parent c7c7771 commit dee6b2c
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Showing 14 changed files with 28 additions and 348 deletions.
53 changes: 2 additions & 51 deletions tool/builder3d/pom.xml
View file
Expand Up @@ -14,36 +14,15 @@

<name>cdk-builder3d</name>
<dependencies>
<dependency>
<groupId>gov.nist.math</groupId>
<artifactId>jama</artifactId>
</dependency>
<dependency>
<groupId>javax.vecmath</groupId>
<artifactId>vecmath</artifactId>
</dependency>
<dependency>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
</dependency>
<dependency>
<groupId>uk.ac.ebi.beam</groupId>
<artifactId>beam-core</artifactId>
</dependency>
<dependency>
<groupId>uk.ac.ebi.beam</groupId>
<artifactId>beam-func</artifactId>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.hamcrest</groupId>
<artifactId>hamcrest</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>cdk-core</artifactId>
Expand All @@ -66,29 +45,19 @@
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>cdk-io</artifactId>
<artifactId>cdk-ctab</artifactId>
<version>${project.parent.version}</version>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>cdk-standard</artifactId>
<version>${project.parent.version}</version>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>cdk-charges</artifactId>
<version>${project.parent.version}</version>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>cdk-forcefield</artifactId>
<version>${project.parent.version}</version>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>cdk-valencycheck</artifactId>
<version>${project.parent.version}</version>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>cdk-sdg</artifactId>
Expand All @@ -99,30 +68,12 @@
<artifactId>cdk-isomorphism</artifactId>
<version>${project.parent.version}</version>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>cdk-diff</artifactId>
<version>${project.parent.version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>cdk-ioformats</artifactId>
<version>${project.parent.version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>cdk-smiles</artifactId>
<version>${project.parent.version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>cdk-extra</artifactId>
<version>${project.parent.version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>cdk-test</artifactId>
Expand All @@ -142,7 +93,7 @@
<artifactId>cdk-testdata</artifactId>
<version>${project.parent.version}</version>
<type>test-jar</type>
<scope>test</scope>
<scope>test</scope>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
Expand Down
29 changes: 0 additions & 29 deletions tool/builder3dtools/pom.xml
View file
Expand Up @@ -14,20 +14,11 @@

<name>cdk-builder3dtools</name>
<dependencies>
<dependency>
<groupId>javax.vecmath</groupId>
<artifactId>vecmath</artifactId>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>cdk-core</artifactId>
<version>${project.parent.version}</version>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>cdk-data</artifactId>
<version>${project.parent.version}</version>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>cdk-silent</artifactId>
Expand All @@ -38,11 +29,6 @@
<artifactId>cdk-interfaces</artifactId>
<version>${project.parent.version}</version>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>cdk-io</artifactId>
<version>${project.parent.version}</version>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>cdk-ctab</artifactId>
Expand All @@ -53,21 +39,6 @@
<artifactId>cdk-standard</artifactId>
<version>${project.parent.version}</version>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>cdk-charges</artifactId>
<version>${project.parent.version}</version>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>cdk-forcefield</artifactId>
<version>${project.parent.version}</version>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>cdk-valencycheck</artifactId>
<version>${project.parent.version}</version>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>cdk-smiles</artifactId>
Expand Down
19 changes: 3 additions & 16 deletions tool/charges/pom.xml
View file
Expand Up @@ -18,14 +18,6 @@
<groupId>javax.vecmath</groupId>
<artifactId>vecmath</artifactId>
</dependency>
<dependency>
<groupId>uk.ac.ebi.beam</groupId>
<artifactId>beam-core</artifactId>
</dependency>
<dependency>
<groupId>uk.ac.ebi.beam</groupId>
<artifactId>beam-func</artifactId>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
Expand All @@ -36,11 +28,6 @@
<artifactId>hamcrest</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>cdk-core</artifactId>
Expand All @@ -53,7 +40,7 @@
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>cdk-io</artifactId>
<artifactId>cdk-ctab</artifactId>
<version>${project.parent.version}</version>
</dependency>
<dependency>
Expand Down Expand Up @@ -85,7 +72,7 @@
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>cdk-extra</artifactId>
<artifactId>cdk-atomtype</artifactId>
<version>${project.parent.version}</version>
<scope>test</scope>
</dependency>
Expand All @@ -107,7 +94,7 @@
<artifactId>cdk-testdata</artifactId>
<version>${project.parent.version}</version>
<type>test-jar</type>
<scope>test</scope>
<scope>test</scope>
</dependency>
</dependencies>

Expand Down
39 changes: 5 additions & 34 deletions tool/forcefield/pom.xml
View file
Expand Up @@ -14,23 +14,6 @@

<name>cdk-forcefield</name>
<dependencies>
<dependency>
<groupId>gov.nist.math</groupId>
<artifactId>jama</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>javax.vecmath</groupId>
<artifactId>vecmath</artifactId>
</dependency>
<dependency>
<groupId>uk.ac.ebi.beam</groupId>
<artifactId>beam-core</artifactId>
</dependency>
<dependency>
<groupId>uk.ac.ebi.beam</groupId>
<artifactId>beam-func</artifactId>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
Expand Down Expand Up @@ -62,17 +45,17 @@
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>cdk-io</artifactId>
<artifactId>cdk-standard</artifactId>
<version>${project.parent.version}</version>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>cdk-standard</artifactId>
<artifactId>cdk-charges</artifactId>
<version>${project.parent.version}</version>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>cdk-charges</artifactId>
<groupId>org.openscience.cdk</groupId>
<artifactId>cdk-atomtype</artifactId>
<version>${project.parent.version}</version>
</dependency>
<dependency>
Expand All @@ -94,19 +77,7 @@
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>cdk-extra</artifactId>
<version>${project.parent.version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>cdk-pdb</artifactId>
<version>${project.parent.version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>cdk-valencycheck</artifactId>
<artifactId>cdk-isomorphism</artifactId>
<version>${project.parent.version}</version>
<scope>test</scope>
</dependency>
Expand Down
23 changes: 2 additions & 21 deletions tool/formula/pom.xml
View file
Expand Up @@ -14,10 +14,6 @@

<name>cdk-formula</name>
<dependencies>
<dependency>
<groupId>javax.vecmath</groupId>
<artifactId>vecmath</artifactId>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
Expand All @@ -28,21 +24,6 @@
<artifactId>hamcrest</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>gov.nist.math</groupId>
<artifactId>jama</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>xom</groupId>
<artifactId>xom</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>cdk-core</artifactId>
Expand Down Expand Up @@ -79,13 +60,13 @@
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>cdk-valencycheck</artifactId>
<artifactId>cdk-atomtype</artifactId>
<version>${project.parent.version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>cdk-io</artifactId>
<artifactId>cdk-valencycheck</artifactId>
<version>${project.parent.version}</version>
<scope>test</scope>
</dependency>
Expand Down

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