This repository contains R code accompanying the manuscript 'Modelling the impact of combining HIV prevention interventions on HIV dynamics in fishing communities in Uganda' (https://doi.org/10.1186/s12879-023-08113-2).
model_no_int.R: baseline model used for calibration
ARF.R: activity region finder
calibration.R: investigate parameter space
model_int.R: model including interventions
output_int.R: post-processing intervention model
model_uncertainty.R: intervention model with varying coverage levels and baseline parameters
output_uncertainty.R: post-processing uncertainty model