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1508 avro schemas #60
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Commits on Apr 13, 2021
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Changed S3Utils, S3MessageAdapter classes' constructors(adjusted docu…
…mentation) to take dictionary with extra parameters allowed as well as methods within this class not to reference config but the variable that was set. Adjusted effected tests.
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Commits on Apr 15, 2021
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Merge branch 'master' into 1500-fix-unit-tests
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1500-WebPublisher adjusted some documentation wording and added test_…
…WebPublisher_unit as unit test until create folder structure for integration vs unit tests.
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1500-Adjusted documentation indentation in WebPublisher
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Commits on Apr 16, 2021
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1500-Changed CsbExtractor class constructor(adjusted documentation) t…
…o take dictionary with extra parameters allowed as well as methods within this class not to reference config but the variable that was set. Adjusted effected tests.
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Commits on Apr 19, 2021
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1500-Added unit tests for WebPublisher. Made sure using autospec=True
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Commits on Apr 28, 2021
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1500-Changed KafkaConsumer class constructors(adjusted documentation)…
… to take dictionary with extra parameters allowed as well as methods within this class not to reference config but the variable that was set. Adjusted effected tests. Removed get_logger method as it wasn't used and we used a different logger then. Added checks for if security wasn't enabled.
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1500-Adjusted KafkaConsumer create_consumer to not do duplicate code,…
… using a topic variable instead. Removed changing name of the consumer_conf to meta_consumer_conf. Added additional logging.
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1500-Added __init__.py to tests directory so was discoverable/module.
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1500-in KafkaConsumer renamed variables so tad more generic. Makes it…
… clearer how similar code is to KafkaPublisher class.
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1500-Fixed KafkaConsumerTest (thought intellij refactor of var name w…
…ould notice this usage).
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1500-KafkaConsumer consolidated config for deserializer.
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1500-Changed KafkaPublisher class constructors(adjusted documentation…
…) to take dictionary with extra parameters allowed as well as methods within this class not to reference config but the variable that was set. Removed logging import and changed to ClientLogger.
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Commits on Apr 29, 2021
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1500-Changed KafkaConsumerTest(s) to have vars named exp where it mak…
…es sense. Added test for extra arguments via constructor. Fixed test for testing less parameters passed in, because more could have made it through.
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Commits on May 4, 2021
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1500-KafkaConsumerTest improved the formatting of dicts, tested retu…
…rn values a little better where could, and changed a test of assertTrue to assertEqual so got to see what the actual value was when failed.
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1500-Changed/added to KafkaPublisherTest(s).
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1500-In KafkaPublisher cleaned up documentation, added method to cons…
…olidate generating the key from UUID, and added a little logging. Consolidated topic generation code too.
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1500-Adjusted csb config variable name from file_identifier_prefix to…
… file_id_prefix as it is in half the other places including S3MessageAdapter constructor.
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1500-Fixed lack of carriage returnin S3Utils for legibility.
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Commits on May 7, 2021
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1500-Changed SqsConsumer class constructor to take dictionary with ex…
…tra parameters allowed. Refactored out of SqsConsumer the connecting part and put into S3Utils, this left only log_level as class var. Put creating a Queue object into receive_messages (can refactor out if ever need again, but single line didn't seem to warrent its own method). Added debug logging.
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1500-Decided to put "connect" back into SqsConsumer. Adjusted input p…
…arameters for receive_message so a user could create their own queue or use our connect to do so and pass either in.
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1500-Fixed some bugs in SqsConsumer.
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1500-Due to changing SqsConsumer class constructor to take dictionary…
… with extra parameters allowed so adjusted the tests and added more with more verification.
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Commits on May 11, 2021
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1500-fixed bug in tests/utils of message missing a carriage return. J…
…ust looks.
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1500-Added logging to SqsHandlers and log_level method parameter. Adj…
…usted SqsConsumer callback parameters to pass along log_level.
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1500-Added tests to SqsHandlersTest and removed config usage.
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1500-Fixed SqsConsumerTest due to parameters into CB changing. skippe…
…d example test.
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1500-Removed unused conf variable.
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1500-Removed unused var conf from classes.
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1500-Changed mock tests to not load configs but use mock data.
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1500-refactored S3Utils connect to take in type parameter instead of …
…us assuming if they say "glacier" they mean a client of service type "glacier". Little clearer to the user and in the code. This allows boto to catch the error of wrong service name specified and it gives a nice list of choices. Added else statement too for cases user specifies a type we don't expect, will add tests to.
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1500-Changed moto dependency to moto[all] because of some issues with…
… a moto version issue. getmoto/moto#3297
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1500-added tests for different connect types for S3Utils
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1500-Changed class constructors checking extra arguments and logging …
…of an error to warning.
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1500-Moved unit tests to tests/unit and integration tests to tests/in…
…tegration. Change circle ci config to run all onestop-python-client tests.
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Commits on May 12, 2021
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1500-Fixed one of the test_S3Utils tests that was commented out. Remo…
…ved some blank lines from S3Utils.
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1500-Updated python-client requirements boto3. Seems to be using an o…
…ld one. Trying to figure out how to force it to a newer one.
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1500-Updated python-client requirements botocore to 1.20.71 due to co…
…nflict between botocore 1.18.11 and moto 2.0.5
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1500-Changed circleci config for python client to try and update boto
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1500-added region_name to S3Utils connect for session. Suspect it was…
… using my local aws config when region was not specified.
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1500-Changing python-client circleci config to see if need to tell it…
… to install boto for pip3 every time.
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1500-updated python-client requirements to install boto
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1500-Changed python-client integration test(s) to use environment var…
…iables if credentials yml doesn't exist. Commented out integration task in circleCI config. Since cannot reach registry on cedardevs.
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Commits on May 13, 2021
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1500-Removed redundant log_level fields in all the configs. Put into …
…credentials template.
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Commits on May 14, 2021
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1500-Changed the kafka config in the scripts for collection and granu…
…le _topic_produce to _topic_publish, as it is in the constructor for KafkaPublisher and KafkaConsumer.
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Commits on May 18, 2021
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1500-Changed exception message to first be a string then passed into …
…exception. Otherwise wasn't evaluating the variable within message.
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1500-Adjusted exception thrown in S3Utils.connect for invalid type, w…
…asn't printing value of variable. Added test for that negative case.
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1500-Fixed log but in SqsConsumer of microseconds process time being …
…multiplied instead of divided to get seconds.
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2500-Added SqsHandlers create_upload_handler back with tests. Didn't …
…realize was used, looked obsolete.
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Commits on May 19, 2021
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1500-Changed references to psi_registry_url to registry_base_url
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Commits on May 20, 2021
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1507-Added sqs_name to helm values.
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Commits on May 21, 2021
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1508-Added unit tests for parsed_record file.
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1507-fixed bug in S3Utils upload_s3 passing in wrong parameter type to
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Commits on May 28, 2021
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1507-Updated circleCI config to run/publish docker image of onestop-p…
…ython-client based on branch name. Removed unnecessary comments.
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1507-Copied root Dockerfile to onestop-python-client to get docker pu…
…blishing images.
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1507-Removed from Dockerfile copy step of module in, had trouble doin…
…g to and from examples hoping unnecessary.
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1507-Changed onestop-python-client Dockerfile to copy onestop-python-…
…client code to working directory then install requirements.txt.
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1507-Add to circleCI building and publishing images of onestop-s3-han…
…dler and onestop-sme onestop-python-client
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1507-Fixed booboo in circleCI of renaming build and not changing name…
… in the jobs section and added the sme and s3 builds to jobs.
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Commits on Jun 1, 2021
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1507-Changed circleCI image tag to 'latest'. Need to revisit.
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Commits on Jun 2, 2021
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1507-Changed dockerfiles back (had changed it due to so problems with…
… circleci) and changed circleci config.
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1507-Removed onestop-python-client dockerfile, unecessary. Therefore …
…changed circleci path for onestop-python-client build to indicate use project root as path. Changed paths in root dockerfile back to ./ instead of / so clearer.
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1507-added comment to sqs-to-registry dockerfile about how things get…
… copied over.
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1507-Changed scripts/sme dockerfile to not install onestop-python-cli…
…ent, path is one up which is out of context for this dockerfile (hint root dockerfile does that step). Added comment about in root dockerfile.
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Commits on Jun 3, 2021
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1507-In helm values files changed image pullPolicy to Always because …
…from what can tell it only pulls if the image name changes, such as if you have a version number. We don't do this ATM.
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Commits on Jun 4, 2021
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1507-To helm/*/values.yaml removed unused sqs_url, added cert locatio…
…ns w comment and set security to false (cedar-devs is false), adjusted s3_bucket2 to a real bucket, fixed bug of granule type needing to be GRANULE, and added kafka information.
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1507-Set metadata_type to uppercase and adjusted the ValueError raise…
…d if it metadata_type wasn't GRANULE or COLLECTION.
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1507-Set metadata_type to uppercase and adjusted the ValueError raise…
…d if it metadata_type wasn't GRANULE or COLLECTION. Changed try/raise in consume method to try/finally with same closing of the consumer as before. This way exceptions do fail script, because before was unclear why it wasn't working.
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1507-Added additional log statement in delete handler if record event…
…Name was a Delete type.
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1507-Updated KafkaConsumer unit test to reflect change neglected to m…
…ention in last commit that the AvroDeserializer constructor needed more specific parameter names (think it got updated and our order of params was wrong).
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1507-Updated scripts to work with new class constructors that take a …
…dict instead of config location. Removed mocking for launch_delete_handler script since have unit tests that cover this now.
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1507-Updated AvroSerializer call to specify parameter name, since ord…
…er of params seem to have changed.
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1507-Updated AvroSerializer call to specify parameter name, since ord…
…er of params seem to have changed. (forgot intellij's multi select for commits doesn't work)
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1507-Removed try/catch around code in KafkaPublisher publish_granule …
…so as to get better error reporting.
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Commits on Jun 5, 2021
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1507-Removed try/catch around code in KafkaPublisher publish_collecti…
…on so as to get better error reporting.
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1507-Updated helm/*/values.yml for Kafka brokers and schema_registry …
…to what they are on cedar-devs.
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Commits on Jun 7, 2021
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1507-Changed helm/*/values file_identifier_prefix to file_id_prefix (…
…was changed a while ago in the code).
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1507-Found bug of not updating the s3Utils connect call to new way, u…
…pdated test to reflect/catch.
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1507-Changed bulid order in CircleCI config, seeing sme/sqs script bu…
…ilds with old code and hoping is because it was being built before the onestop-python-client-build.
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1507-Changed circleCI config to have the onestop-python-client-build …
…require onestop-python-client-test to run and the two script builds to require onestop-python-client-build to run.
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1507-Changed circleci config - added colons at end of jobs that had r…
…equires field.
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1507-Making a visual change to onestop-python-client code to test new…
… build requires configuration.
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Commits on Jun 8, 2021
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1507-Changed SqsHandlers to not serialize the json payload but instea…
…d do a json dumps. Was complaining ParsedRecord doesn't have method serialize. Fixed tests, also added size and versionid to test util message since S3MessageAdapter.transform required.
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1507-Changed helm*/values.yml onestop and registry urls from onestop*…
… to os*, is url on cedardevs.
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1507-Added passing in log level to callback method in KafkaConsumer. …
…Adjusted some log statements.
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Commits on Jun 9, 2021
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1507-Removed try/finally from the KafkaConsumer.consume() since our c…
…ode shouldn't be able to throw any exceptions, the ones that could happen you want to bubble up (like connection problems). Moved the closing of connection after while polling section, since was closing the connection.
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1507-Narrowed down try/except code in the SqsConsumer.consume() so if…
… there's a problem with the callback it gets thrown - also the sqs_message.delete is outside try so if a connection problem that ends everything.
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1507-Fixed test for a KafkaConsumer call back that now includes log l…
…evel.
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1507-Fixed a test missed related to commit of changed SqsHandlers to …
…not serialize the json payload but instead do a json dumps.
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1507-Updated scripts to work with new class constructors that take a …
…dict instead of config location.
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1507 - Changed warning about extra constructor arguments to debug sta…
…tement since no harm in extra params.
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Commits on Jun 10, 2021
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1507-Change all init parameters from metadata_type to their classname…
…_metadata_type, including changing type var used in S3MessageAdapter.
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Commits on Jun 11, 2021
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1507-Added metadata_type validation to S3MessageAdapter and tests.
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1507-Adjusted log messages in KafkaConsumer and KafkaPublisher create…
… methods. Mostly added, removed a redundant one.Adjusted one in deliver reports from error to info.
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1507-KafkaPublisher consolidated create method's config into one spot.
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Commits on Jun 15, 2021
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1507-To the scripts readme added more information about helm, build i…
…nformation, and tried to organize by the automated process vs manual. Second pass to come in next story.
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Commits on Jun 25, 2021
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1508-Changed python package avro-python3 to avro since it sounds like…
… that package was merged into the avro one and will be removed in the future.
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1508-Changed avro schema requirement of relationship to be a string. …
…This is because it was too nested and to change to an enum didn't seem to work with Optional.
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1508-Didn't realize our avro RelationshipType was referenced elsewher…
…e. Removed it since switched to simply a string.
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1508-Removed unused avro tests since looks like an import is no longe…
…r available. Never worked for our code, would need work.
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Commits on Jun 28, 2021
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Merge branch '1507-Update-scripts' into 1508-avro-schemas
# Conflicts: # onestop-python-client/onestop/util/S3MessageAdapter.py
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1508-Fixed merge change of variable from prior commit, didn't notice.
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Commits on Jul 2, 2021
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1508-Removed mock from python-client test_S3MessageAdapter, simple ut…
…il class methods.
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1508-Cleaned up test_S3MessageAdapter tests since more of a static ut…
…il class, didn't need so much setup. Moved constructor test up with other constructor test.
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1508-In test_S3MessageAdapter moved init test up with other init test…
…s... Had missed.
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1508-Undid changing relationship to use RecordType, noticed it is low…
…ercase.Changed RelationshipType to be Enum class like RecordType, to reflect schemas repo.
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Commits on Jul 3, 2021
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1508-Added more Enum classes to list into schema jsonEncoder.py
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1508-Added more Enum classes to list into schema jsonEncoder.py, stup…
…id intellij separated the changes.
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Commits on Jul 7, 2021
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1508-Fixed bug of test_messaged defined with a variable that wasn't y…
…et defined, config_dict wasn't defined yet.
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1508-Updated sme python script to reflect avro "relationships" type c…
…hanging.
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1508-Changed S3MessageAdapter.transform to take a single record, sinc…
…e that's all it is transforming on. Renamed var in test_S3MessageAdapter to be more general name.
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1508-Changed SqsHandlers to take a single record, since that's all it…
… is operating on.
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Commits on Jul 9, 2021
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1508-added avro psi schema unit tests and Enum jsonEncoder tests.
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1508-Changed avro schema FileLocationType to Enum
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1508-Changed avro schema FileLocations in parsed_record to match sche…
…ma_registry, which is a Map/Dict {str, FileLocation}. Also fixed sme script for last change of FileLocationType being an enum, not class with var type.
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Commits on Jul 10, 2021
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1508-changed avro ValidDescriptor to an enum, as it is in schema regi…
…stry. Not a blank class.
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1508-Moved test_jsonEncoded test folder up one directory, is a util o…
…f schemas not psiSchemaClasses.
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1508-Added ValidDescriptor to jsonEncoder Enum list plus to test_json…
…Encoder file.
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Commits on Jul 12, 2021
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1508-added ParsedRecord test current progress.
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1508-Changed avro schema Method to Enum to match schema registry. Add…
…ed tests.
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1508-Changed test_jsonEncoder tests to not need manually typing the c…
…lass name in the assertion.
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1508-Changed avro schema OperationType to Enum to match schema regist…
…ry. Added tests.
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1508-Finished test_ParsedRecord for the avro object ParsedRecord.
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1508-Changed scripts with callback methods to define their records pa…
…rameter as a record. This is because our S3MessageAdapter.transform, SqsHandler methods, and SqsConsumer.receive_messages all eventually only operate on 1 record.
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1508-Updated launch_pyconsumer script to have a try/catch around get_…
…uuid_metadata
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1508-Changed avro enum class vars to all uppercase as is typical of e…
…num classes.
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Commits on Jul 13, 2021
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1508-Fixed typo in jsonEncoder ENUMS dict; RelationshipType was all u…
…ppercase.
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1508-Added tests to hit json decoding of ENUM classes with json.loads…
…(value['content'], object_hook=as_enum)
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1508-Updated sme script for values that are now an ENUM type. Also ch…
…anged handler in script to work off the actual value passed in not just the test data in there.
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Commits on Jul 22, 2021
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1509-added discovery spatial bounding test for variations of spatial …
…types. Removed some duplicated tests (ones covered by other tests).
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Commits on Aug 19, 2021
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1508-Added negative tests for fields that took an Enum type.
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