The present repository contains the code and the instructions to reproduce the results of the article Strand asymmetry influences mismatch resolution during single-strand annealing.
To reproduce the analyses, you will need a Linux distribution, GNU make and Docker. The code has only been tested on Ubuntu 20.04.
git clone https://github.com/cellcomplexitylab/strand_asymmetry
cd strand_asymmetry
make
The process will take approximately 2 days and will require 300 GB of available disk space. The data
is downloaded from ENA, which is a
mirror of the repository on GEO. The
data regarding the mapping of the reporters is created in the directory mapping, the data regarding
the calls of the repair events is created in the directory mismatches and the figures are created
in the repository called figures.
The content of the repository is covered by the MIT license.