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Original file line number | Diff line number | Diff line change |
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from __future__ import annotations | ||
from dataclasses import dataclass | ||
from datetime import date | ||
from pygef.broxml import Location | ||
import polars as pl | ||
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@dataclass | ||
class BoreData: | ||
todo: int | ||
research_report_date: date | ||
description_procedure: str | ||
delivered_location: Location | ||
delivered_vertical_position_offset: float | None | ||
delivered_vertical_position_datum: str | ||
delivered_vertical_position_reference_point: str | ||
bore_rock_reached: bool | ||
final_bore_depth: float | ||
final_sample_depth: float | None | ||
bore_hole_completed: bool | ||
data: pl.DataFrame |
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Original file line number | Diff line number | Diff line change |
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from __future__ import annotations | ||
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import io | ||
import re | ||
from pathlib import Path | ||
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from pygef.broxml import resolvers | ||
from pygef.broxml.xml_parser import read_xml | ||
from pygef.bore import BoreData | ||
from lxml import etree | ||
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# maps keyword argument to: | ||
# xpath: query passed to elementree.find | ||
# resolver: A function that converts the string to the proper datatype | ||
# Fn(str) -> Any | ||
# el-atrr: Optional: attribute of an element taken before send to resolver | ||
# Version 1 not supported, this is a WIP | ||
BORE_ATTRIBS_V1 = { | ||
"research_report_date": { | ||
"xpath": "./researchReportDate/brocom:date", | ||
"resolver": resolvers.parse_date, | ||
"el-attr": "text", | ||
}, | ||
"description_procedure": { | ||
"xpath": "./isbhrgt:boreholeSampleDescription/bhrgtcom:descriptionProcedure", | ||
"el-attr": "text", | ||
}, | ||
"delivered_location": { | ||
"xpath": "./isbhrgt:deliveredLocation/bhrgtcom:location/gml:Point", | ||
"resolver": resolvers.parse_gml_location, | ||
}, | ||
"delivered_vertical_position_offset": { | ||
"xpath": "./isbhrgt:deliveredVerticalPosition/bhrgtcom:offset", | ||
"resolver": resolvers.parse_float, | ||
"el-attr": "text", | ||
}, | ||
"delivered_vertical_position_datum": { | ||
"xpath": "./isbhrgt:deliveredVerticalPosition/bhrgtcom:verticalDatum", | ||
"resolver": resolvers.lower_text, | ||
"el-attr": "text", | ||
}, | ||
"delivered_vertical_position_reference_point": { | ||
"xpath": "./isbhrgt:deliveredVerticalPosition/bhrgtcom:localVerticalReferencePoint", | ||
"resolver": resolvers.lower_text, | ||
"el-attr": "text", | ||
}, | ||
"bore_rock_reached": { | ||
"xpath": "./isbhrgt:boring/bhrgtcom:rockReached", | ||
"resolver": resolvers.parse_bool, | ||
"el-attr": "text", | ||
}, | ||
"final_bore_depth": { | ||
"xpath": "./isbhrgt:boring/bhrgtcom:finalDepthBoring", | ||
"resolver": resolvers.parse_float, | ||
"el-attr": "text", | ||
}, | ||
"final_sample_depth": { | ||
"xpath": "./isbhrgt:boring/bhrgtcom:finalDepthSampling", | ||
"resolver": resolvers.parse_float, | ||
"el-attr": "text", | ||
}, | ||
"bore_hole_completed": { | ||
"xpath": "./isbhrgt:boring", | ||
"resolver": resolvers.parse_bool, | ||
"el-attr": "text", | ||
}, | ||
} | ||
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BORE_ATTRIBS_V2 = { | ||
"research_report_date": { | ||
"xpath": "./researchReportDate/brocom:date", | ||
"resolver": resolvers.parse_date, | ||
"el-attr": "text", | ||
}, | ||
"description_procedure": { | ||
"xpath": "./boreholeSampleDescription/bhrgtcom:descriptionProcedure", | ||
"el-attr": "text", | ||
}, | ||
"delivered_location": { | ||
"xpath": "./deliveredLocation/bhrgtcom:location/gml:Point", | ||
"resolver": resolvers.parse_gml_location, | ||
}, | ||
"delivered_vertical_position_offset": { | ||
"xpath": "./deliveredVerticalPosition/bhrgtcom:offset", | ||
"resolver": resolvers.parse_float, | ||
"el-attr": "text", | ||
}, | ||
"delivered_vertical_position_datum": { | ||
"xpath": "./deliveredVerticalPosition/bhrgtcom:verticalDatum", | ||
"resolver": resolvers.lower_text, | ||
"el-attr": "text", | ||
}, | ||
"delivered_vertical_position_reference_point": { | ||
"xpath": "./deliveredVerticalPosition/bhrgtcom:localVerticalReferencePoint", | ||
"resolver": resolvers.lower_text, | ||
"el-attr": "text", | ||
}, | ||
"bore_rock_reached": { | ||
"xpath": "./boring/bhrgtcom:rockReached", | ||
"resolver": resolvers.parse_bool, | ||
"el-attr": "text", | ||
}, | ||
"final_bore_depth": { | ||
"xpath": "./boring/bhrgtcom:finalDepthBoring", | ||
"resolver": resolvers.parse_float, | ||
"el-attr": "text", | ||
}, | ||
"final_sample_depth": { | ||
"xpath": "./boring/bhrgtcom:finalDepthSampling", | ||
"resolver": resolvers.parse_float, | ||
"el-attr": "text", | ||
}, | ||
"bore_hole_completed": { | ||
"xpath": "./boring", | ||
"resolver": resolvers.parse_bool, | ||
"el-attr": "text", | ||
}, | ||
"data": { | ||
"xpath": "./boreholeSampleDescription/bhrgtcom:descriptiveBoreholeLog", | ||
"resolver": resolvers.process_bore_result, | ||
}, | ||
} | ||
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def read_bore(file: io.BytesIO | Path | str) -> list[BoreData]: | ||
root = etree.parse(file).getroot() | ||
match = re.compile(r"xsd/.*/(\d\.\d)") | ||
matched = match.search(root.nsmap["bhrgtcom"]) | ||
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if matched is None: | ||
raise ValueError("could not find the brhtcom version") | ||
else: | ||
if 3.0 >= float(matched.group(1)) < 2.0: | ||
raise ValueError("only bhrgtcom/2.x is supported ") | ||
return read_xml(root, BoreData, BORE_ATTRIBS_V2, "sourceDocument") |
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