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Did not find remapped ID location: #118

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fbeghini opened this issue Jul 10, 2018 · 2 comments
Open

Did not find remapped ID location: #118

fbeghini opened this issue Jul 10, 2018 · 2 comments

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@fbeghini
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I'm trying to parse a gff file downloaded from NCBI (GCA_001536265) and when I iterate on the parser it gives me this error
Did not find remapped ID location: gene670, [[42143, 44074], [44736, 45087], [45979, 46332], [47064, 47369]], [42143, 47369]

Inspecting the GFF with GFFExaminer gives no error at all.

@chapmanb
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Francesco -- sorry about the issues. In general, we've been recommeding using the gffutils parser, which is nicer and more actively maintained: https://github.com/daler/gffutils. Would you be able to try this out and see if it solves your parsing issues?

@fbeghini
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Can I add annotation data from an external FASTA file to the GFF3 like the approach described here ?

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