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HPC Sun Grid Engine Bcbio installation #1378
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Tunc;
Hope this helps. |
Dear @chapmanb; I came across with file problem in the ftp server during installation. I think there is a problem in the file location in the ftp server. Also, I share my environment variables in my .bashrc . Are these enough? Do I have to add anything else to my .bashrc ?? My next challenge is to bring bcbio to my school's server. I believe I can introduce bcbio to my school. Best regards,
|
Tunc;
and re-run the install/update procedure. Thanks much for the report. |
- Update hg38 dbsnp to version 147. Fixes bcbio/bcbio-nextgen#1378 - Add bamutil and gemini supporting tools to bcbio installation. bcbio/bcbio-nextgen#1372
Hi,
I tried to install bcbio_nextgen.py to our HPC. I installed bcbio to a folder called bcbio in my scratch directory.( not in usr/loca/share as it was told in documentation). After installation, we couldnt get the system run after we change some of the python paths from /anaconda1anaconda2anaconda3/ to our bcbio annotation/python. However, we encountered with problems;
bcbio_nextgen.py
to the command line, the response came after 2-3 minutes. Whereas in amazon this action finales in 5-10 seconds. How can we debug it?--genome
part how should I state that I need both Grch37 and hg38 to be installed?Thank you very much,
Best,
Tunc.
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