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'No missing ID's' when there are missing IDs #125

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chasemc opened this issue Jun 21, 2019 · 0 comments
Open

'No missing ID's' when there are missing IDs #125

chasemc opened this issue Jun 21, 2019 · 0 comments
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@chasemc
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chasemc commented Jun 21, 2019

When entering IDs for the Bruker conversion 'No missing ID's' is displayed no matter what after saving.

Relevant

anyMissing <- reactive({
req(rawFilesLocation())
req(sampleMapReactive$rt)
acquisitonInformation1 <<- acquisitonInformation
sampleMapReactive1 <<- sampleMapReactive
spots <- unlist(lapply(acquisitonInformation(), function(x) x$spot))
IDBacApp::findMissingSampleMapIds(spots = spots,
sampleMap = sampleMapReactive$rt)
})
output$missingSampleNames <- shiny::renderText({
if (length(anyMissing()$missing) == 0) {
paste0("No missing IDs")
} else {
paste0(paste0(anyMissing()$missing, collapse = " \n ", sep = ","))
}
})

Also, update unit test:
https://github.com/chasemc/IDBacApp/blob/6bed5abdee2b09b6e128ba623539b34d5e16e412/tests/testthat/test-findmissingsamplemapids.R

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