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Python library for interacting with KNOSSOS data sets and annotation files

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knossos_utils

This repository serves as a place for python code that interacts with KNOSSOS data sets or annotation files. However, the code here is standalone and you won't find KNOSSOS-Plugins here (but feel free to be inspired by it when writing plugins).

knossosdataset

knossosdataset provides easy access tp a KNOSSOS-dataset for reading and writing raw and overlay data via Python. It is also able to create KNOSSOS-datasets from scratch by writing knossos.conf's and creating the necessary directories. Moreover, it provides mergelist_tools for working with supervoxel-representations in a KNOSSOS-dataset.

chunky

chunky provides a meta-representation of a knossosdataset to work on the raw data without the need to copy and save it in a different format. It is currently in an early-release stage and will be soon improved in terms of readability (comments, docstrings, examples).

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Python library for interacting with KNOSSOS data sets and annotation files

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