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metaRE

R package for motif discovery via meta-analysis of microarrays and RNA-Seq

System requirements

  • R >= 3.3.2
  • Compiler with C++11 support

Installation

  1. Install Bioconductor:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite()
  1. Install required packages:
install.packages(c('Rcpp',  'BH', 'futile.logger', 'foreach'))
biocLite(c('limma', 'edgeR', 'GEOquery'))
  1. Download metaRE:
git clone https://github.com/cheburechko/metaRE
  1. Install metaRE: From console
R CMD INSTALL [path/to/package]

or from R using devtools

install.packages('devtools')
devtools::install('[path/to/package]')